Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaactcaatcatttttattgccttctttgaaaatacattgttttaatttaaccacatggcatgagtttcttattgtgcttttgttttgtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCAACCATCCCAGTAACAGGCACTGGCATTAACCCTGCTAGGAGTCTAGGAG

Basic information

species Glycine max
transcript GLYMA16G27140.4
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21677365|gb|BQ629716.1|BQ629716
EST:     TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: gi|208118597|gb|GD918322.1|GD918322
EST:     TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: gi|10237489|gb|BE806377.1|BE806377
EST:     GTTCTCTGCAACTGATCCCCAA-AGGAATGCTACAGATTCTTATGTGCCG                         GTTTTGGCTCCACTTTCAATTGGCTTTGCT
genomic: GTTCTCTGCAACTGA-CCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCT
EST: gi|120533343|gb|EH261476.1|EH261476
EST:     TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GGTTTGGCTCCCCTTCCAA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAA
EST: gi|209729770|gb|BW658575.1|BW658575
EST:     TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: gi|151410185|gb|EV280000.1|EV280000
EST:     TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCA
EST: gi|209699908|gb|BW652548.1|BW652548
EST:     TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: gi|208120704|gb|GD917489.1|GD917489
EST:     TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: gi|151394444|gb|EV264315.1|EV264315
EST:     TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCGCTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: gi|208053598|gb|GD852671.1|GD852671
EST:     TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCACGGTTCACTTGGCA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: gi|193317998|gb|FK283322.1|FK283322
EST:     TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatttaaccacatggcatgagtttcttattgtgcttttgttttgtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCAACCATCCCAGTAACAGGCACTGGCATTAACCCTGCTAGGAGTCTAGGAG
   atttaac  putative branch site (score: 3)
                       tttcttatt  TA-rich tract