1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtggttatctatattctttatatattcatctttcattatttcattccattccttagcttaggttagcctcaacattcatgttcaatcatgtgctcatctgattgaatgatcctatgactttttttaatagGTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGAAAAAGCTCCAG
species | Glycine max |
transcript | GLYMA16G27050.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATATGCAAGGAATTCAGGAGACCTGGGCTTGGATAGTTTCTTCAAGAAG GTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGAAAAAGEST: gi|13252253|gb|BG363156.1|BG363156
genomic: AATATGCAAGGAATTCAGGAGACCTGGGCTTGGATAGTTTCTTCAAGAAGgtggttatct ... tttttaatagGTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGAAAAAG
EST: AATATGCAAGGAATTCAGGAGACCTGGGCTTGGATAGTTTCTTCAAGAAG GTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGAAAAAGEST: gi|208299214|gb|GE097565.1|GE097565
genomic: AATATGCAAGGAATTCAGGAGACCTGGGCTTGGATAGTTTCTTCAAGAAGgtggttatct ... tttttaatagGTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGAAAAAG
EST: AATATGCAAGGAATTCAGGAGACCTGGGCTTGGATAGTTTCTTCAAGAAG GTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGAAAAAGEST: gi|21888883|gb|BQ742096.1|BQ742096
genomic: AATATGCAAGGAATTCAGGAGACCTGGGCTTGGATAGTTTCTTCAAGAAGgtggttatct ... tttttaatagGTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGAAAAAG
EST: AATATGCAAGGAATTCAGGAGACCTGGGCTTGGATAGTTTCTTCAAGAAG GTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGAAAAAGEST: gi|192324538|gb|FK016789.1|FK016789
genomic: AATATGCAAGGAATTCAGGAGACCTGGGCTTGGATAGTTTCTTCAAGAAGgtggttatct ... tttttaatagGTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGAAAAAG
EST: AATATGCAAGGAATTCAGGAGACCTGGGCTTGGATAGTTTCTTCAAGAAG GTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGAAAAAGEST: gi|192294341|gb|FG987270.1|FG987270
genomic: AATATGCAAGGAATTCAGGAGACCTGGGCTTGGATAGTTTCTTCAAGAAGgtggttatct ... tttttaatagGTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGAAAAAG
EST: AATATGCAAGGAATTCAGGAGACCTGGGCTTGGATAGTTTCTTCAGGAAG GTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGAAAAAG
genomic: AATATGCAAGGAATTCAGGAGACCTGGGCTTGGATAGTTTCTTCAAGAAGgtggttatct ... tttttaatagGTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGAAAAAG
tcatgttcaatcatgtgctcatctgattgaatgatcctatgactttttttaatagGTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGAAAAAGCTCCAG
atctgat putative branch site (score: 4)
cttttttt putative PPT
tatgactttttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggttatctatattctttatatattcatctttcattatttcattccattccttagcttaggttagcctcaacattcatgttcaatcatgtgctcatctgattgaatgatcctatgactttttttaatagGTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGAAAAAGCTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA