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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatgccattatcaactatatacacttgtgctaatgtctcctctatttgtgttttctttttccaaaggttggtcattatttcttgatatttattttgcagGCAGTTGAACTTGGAGGTTTGTTGAAACTAATGCTCAGGAAGATGGCCTTGCAGTTGAACAATCCACCGTTCAACTATATGATTCACACTAGTCCACTTC

Basic information

species Glycine max
transcript GLYMA16G26930.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404272|gb|EV274082.1|EV274082
EST:     TTGTTCCTCGGTACCACACTGCTCACTTCCATGAATTGGATGCTGAAAAG                         GCAGTTGAACTTGGAGGTTTGTTGAAACTAATGCTCAGGAAGATGGCCTTG
genomic: TTGTTCCTCGGTACCACACTGCTCACTTCCATGAATTGGATGCTGAAAAGgtaccacttc ... tattttgcagGCAGTTGAACTTGGAGGTTTGTTGAAACTAATGCTCAGGAAGATGGCCTTG
EST: gi|22930292|gb|BU547431.1|BU547431
EST:     TTGTTCCTCGGTACCACACTGCTCACTTCCATGAATTGGATGCTGAAAAG                         GCAGTTGAACNNNGAGGTTTGTTGAAACTAATGCTCAGGAAGATGGCCTTG
genomic: TTGTTCCTCGGTACCACACTGCTCACTTCCATGAATTGGATGCTGAAAAGgtaccacttc ... tattttgcagGCAGTTGAACTTGGAGGTTTGTTGAAACTAATGCTCAGGAAGATGGCCTTG
EST: gi|254347633|gb|GR853882.1|GR853882
EST:     TTGTTCCTCGGTACCACACTGCTCACTTCCATGAATTGGATGCTGAAAAG                         GCAGTTGAACTTGGAGGTTTGTTGAAACTAATGCTCAG-AAGATGGGCCTT
genomic: TTGTTCCTCGGTACCACACTGCTCACTTCCATGAATTGGATGCTGAAAAGgtaccacttc ... tattttgcagGCAGTTGAACTTGGAGGTTTGTTGAAACTAATGCTCAGGAAGATGG-CCTT
EST: gi|151399258|gb|EV269129.1|EV269129
EST:     TTGTTCCTCGGTACCACACTGCTCACTTCCATGAATTGGATGCTGAAAAG                         GCAGTTGAACTTGGAGGTTTGTTGAAACTAATGCTCAGGAAGATGGCCTTG
genomic: TTGTTCCTCGGTACCACACTGCTCACTTCCATGAATTGGATGCTGAAAAGgtaccacttc ... tattttgcagGCAGTTGAACTTGGAGGTTTGTTGAAACTAATGCTCAGGAAGATGGCCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtgttttctttttccaaaggttggtcattatttcttgatatttattttgcagGCAGTTGAACTTGGAGGTTTGTTGAAACTAATGCTCAGGAAGATGGCCTTGCAGTTGAACAATCCACCGTTCAACTATATGATTCACACTAGTCCACTTC
                                   tcttgat  putative branch site (score: 4)
                                           tttatttt  CT-rich tract
                           tcattatttcttgata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcatgccattatcaactatatacacttgtgctaatgtctcctctatttgtgttttctttttccaaaggttggtcattatttcttgatatttattttgcagGCAGTTGAACTTGGAGGTTTGTTGAAACTAATGCTCAGGAAGATGGCCTTGCAGTTGAACAATCCACCGTTCAACTATATGATTCACACTAGTCCACTTC

-catgcca
- - - - - - - - - - - - cttgtgc