Sequence
atgc intronic sequence ATGC exonic sequence...acagctaacaccttttgcatcaatgttacataggtaaacatcattgtagtttctttttaattatttgcatgatctcttccaaaatatttgattttatcagGGTAGAAGAAATTCAGTGTCAGTTGGAAGAACTGGATTTGATGAAATGTACCTCTTCAGTCCTGGCTCAAGGGTTGAAATTTACAGCAAGTATTCTTACA
Basic information
species | Glycine max |
transcript | GLYMA16G26900.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22929303|gb|BU546442.1|BU546442EST: NAAGTCACGTGTACACAGATGTGCCTCGAAATTTTACAGTGATTGACAGG GGTAGAAGAAATTCAGTGTCAGTTGGAAGAACTGGATTTGATGAAATGTAC
genomic: TAAGTCACGTGTACACAGATGTGCCTCGAAATTTTACAGTGATTGACAGGgtatgtaatt ... attttatcagGGTAGAAGAAATTCAGTGTCAGTTGGAAGAACTGGATTTGATGAAATGTAC
EST:
gi|10233201|gb|BE802089.1|BE802089EST: TAAGTCACGTGTACACAGATGTGCCTCGAAATTTTACAGTGATTGACAGG GGTAGAAGAAATTCAGTGTCAGTTGGAAGAACTGGATTTGATGAAATGTAC
genomic: TAAGTCACGTGTACACAGATGTGCCTCGAAATTTTACAGTGATTGACAGGgtatgtaatt ... attttatcagGGTAGAAGAAATTCAGTGTCAGTTGGAAGAACTGGATTTGATGAAATGTAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtagtttctttttaattatttgcatgatctcttccaaaatatttgattttatcagGGTAGAAGAAATTCAGTGTCAGTTGGAAGAACTGGATTTGATGAAATGTACCTCTTCAGTCCTGGCTCAAGGGTTGAAATTTACAGCAAGTATTCTTACA
ttttatc CT-rich tract
ttccaaaatatttgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acagctaacaccttttgcatcaatgttacataggtaaacatcattgtagtttctttttaattatttgcatgatctcttccaaaatatttgattttatcagGGTAGAAGAAATTCAGTGTCAGTTGGAAGAACTGGATTTGATGAAATGTACCTCTTCAGTCCTGGCTCAAGGGTTGAAATTTACAGCAAGTATTCTTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - ctaacac
- - - - - - ttttgca
- - - - - - - - - - caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc