Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193608999|gb|FK561583.1|FK561583EST: GTCACGGTTCCTGTATATTTTCAGGGAG TGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAAC
genomic: GTCACGGTTCCTGTATATTTTCAGGAAGgtataatttc ... tggtgaacagTGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAAC
EST:
gi|193546085|gb|FK502290.1|FK502290EST: GTCACGGTTCCTGTATATTTTCAGGAAG TGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATC
genomic: GTCACGGTTCCTGTATATTTTCAGGAAGgtataatttc ... tggtgaacagTGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATC
EST:
gi|193687631|gb|FK633476.1|FK633476EST: GTCACGGTTCCTGTATATTTTCAGGAAG TGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAA
genomic: GTCACGGTTCCTGTATATTTTCAGGAAGgtataatttc ... tggtgaacagTGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAA
EST:
gi|193478660|gb|FK444131.1|FK444131EST: GTCACGGTTCCTGTATATTTTCAGGAAG TGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAAC
genomic: GTCACGGTTCCTGTATATTTTCAGGAAGgtataatttc ... tggtgaacagTGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAAC
EST:
gi|193497441|gb|FK458293.1|FK458293EST: GTCACGGTTCCTGTATATTTTCAGGAAG TGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGTTCCATCAAC
genomic: GTCACGGTTCCTGTATATTTTCAGGAAGgtataatttc ... tggtgaacagTGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAAC
EST:
gi|193350844|gb|FK318688.1|FK318688EST: GTCACGGTTCCTGTATATTTTCAGGAAG TGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAAC
genomic: GTCACGGTTCCTGTATATTTTCAGGAAGgtataatttc ... tggtgaacagTGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAAC
EST:
gi|193582908|gb|FK542336.1|FK542336EST: GTCACGGTTCCTGTATATTTTCAGGGAG TGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAAC
genomic: GTCACGGTTCCTGTATATTTTCAGGAAGgtataatttc ... tggtgaacagTGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAAC
EST:
gi|193384704|gb|FK351046.1|FK351046EST: GTCACGGTTCCTGTATATTTTCAGGAAAG TGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATC
genomic: GTCACGGTTCCTGTATATTTTCAGGAA-Ggtataatttc ... tggtgaacagTGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggtgcatgttccttatcatttcttttttgtttctctttatatttttggtgaacagTGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAACAAATTCCACAAATTCAGGGTGCTTGTCCCAATATTACAATGGTGGATTT
ttccttatcatttctt CT-rich tract
ttatcatttctttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgttccaattctcatttcttcaccacaaaaagctgaaaatttattggtgcatgttccttatcatttcttttttgtttctctttatatttttggtgaacagTGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAACAAATTCCACAAATTCAGGGTGCTTGTCCCAATATTACAATGGTGGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA