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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatattgtgctccgccttcttttaaaatcatggaagggaatgatatctgaattttgacaacttatgtttttcttaatattttctaatttaaaattacagCATGTACCCCGGATAAATTCCTTTATCCCCACTGTAAGTGATGCCAGTATGGATCACCAGCGTCTGCTTCAGAG

Basic information

species Glycine max
transcript GLYMA16G26640.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6482327|gb|AW201594.1|AW201594
EST:     AATTAGATGGAGCAGTTGGCCGGCGCCTTACCAACTTGGAACCTGTTCGT                         CATGTACCCCGGATAAATTCCTTTATCCCCACTGTAAGTGATGCCAGTATG
genomic: AATTAGATGGAGCAGTTGGCCGGCGCCTTACCAACTTGGAACCTGTTCGTgtaagaattc ... aaaattacagCATGTACCCCGGATAAATTCCTTTATCCCCACTGTAAGTGATGCCAGTATG
EST: gi|23063967|gb|BU578740.1|BU578740
EST:     AATTAGATGGAGCAGTTGGCCGGCGCCTTACCAACTTGGAACCTGTTCGT                         CATGTACCCCGGATAAATTCCTTTATCCCCACTGTAAGTGATGCCAGTATG
genomic: AATTAGATGGAGCAGTTGGCCGGCGCCTTACCAACTTGGAACCTGTTCGTgtaagaattc ... aaaattacagCATGTACCCCGGATAAATTCCTTTATCCCCACTGTAAGTGATGCCAGTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctgaattttgacaacttatgtttttcttaatattttctaatttaaaattacagCATGTACCCCGGATAAATTCCTTTATCCCCACTGTAAGTGATGCCAGTATGGATCACCAGCGTCTGCTTCAGAG
                                    ttctaat  putative branch site (score: 2)
              aacttatgtttttctt  TA-rich tract