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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaaacaattctctgttttgttttgtgttggtttcaagttttccaccaatttgttttctcagttttgttatgtgactctttctttggctgtgattggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGAAACAGAACCGGGCAACCTTATATTTTGCAAACAAATGTGTTCACCGGTG

Basic information

species Glycine max
transcript GLYMA16G26630.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26630.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ18918 (Selaginella moellendorffii), 3'ss of exon 2
gtaagaaaaacaattctctgttttgttttgtgttggtttcaagttttccaccaatttgttttctcagttttgttatgtgactctttctttggctgtgattggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGAAACAGAACCGGGCAACCTTATATTTTGCAAACAAATGTGTTCACCGGTG------
|||||||||   ||||||  || | |  || | |    |                        | | ||||| |   | ||| | |         |   || |    ||| |  |||||| | ||      || ||||| || ||||||||||||||||||||||  | |||||||||||| ||| | || || ||  | ||  |    |      
gtaagaaaacttattctccattctatcctgggataaccttg---------------------ttgaattttgctcctttactttct---------tagatgtcttcacagATGCCATCCAAAGAC------CACGATGAGATTGACTTTGAGTTCTTGGGAAACACCAGCGGGCAACCTTACATTGTCCACACCAACATCTTTGCAAACGGAACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298181242|gb|HO022681.1|HO022681
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|26057164|gb|CA800078.1|CA800078
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|26057309|gb|CA800223.1|CA800223
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|26047926|gb|CA784566.1|CA784566
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|209697680|gb|BW655581.1|BW655581
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|213608142|gb|DB963044.1|DB963044
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|10710011|gb|BF009735.1|BF009735
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|21257114|gb|BQ454002.1|BQ454002
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|8826632|gb|BE210362.1|BE210362
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|21677422|gb|BQ629773.1|BQ629773
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|26047909|gb|CA784550.1|CA784550
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|192325208|gb|FK019109.1|FK019109
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|192300515|gb|FG991497.1|FG991497
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATTCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|37995899|gb|CF807488.1|CF807488
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|151410958|gb|EV280773.1|EV280773
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|15815678|gb|BI787953.1|BI787953
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|12688333|gb|BG154669.1|BG154669
EST:     ATAAAATTGGTTGCTGGTGATTCAGCCT-GCACAGTCACCTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ATAAAATTGGTTGCTGGTGATTCAG-CTGGCACAGTCA-CTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|14125481|gb|BG789919.1|BG789919
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|298197960|gb|HO039499.1|HO039499
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|10237640|gb|BE806528.1|BE806528
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|9204019|gb|BE330243.1|BE330243
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|7925629|gb|AW831655.1|AW831655
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|298174405|gb|HO014550.1|HO014550
EST:     ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTGCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... ggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttttctcagttttgttatgtgactctttctttggctgtgattggcactgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGAAACAGAACCGGGCAACCTTATATTTTGCAAACAAATGTGTTCACCGGTG
            ttttgttat  TA-rich tract