1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aattttactcatagatctccaaagttttagtagttaataacattgttgaaggtgtgaactttgatttgatgggtttgatttgtgtttggtggtgacacagGAGTATTGCTGTCCTGACACTTGGTGTGTAGAAGAAGGGCTATCTTCCTTTCTACCTGTGTTTTGCGTTGTGTACAAGAGTTTGAGAACTAACATCTGAT
species | Glycine max |
transcript | GLYMA16G26550.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTTGAGGGTTCAATTTCCTGGCAAGCATAGCAGATCTGGGTTCTTCAAG GAGTATTGCTGTCCTGACACTTGGTGTGTAGAAGAAGGGCTATCTTCCTTTEST: gi|208292323|gb|GE092423.1|GE092423
genomic: TCTTGAGGGTTCAATTTCCTGGCAAGCATAGCAGATCTGGGTTCTTCAAGgttagaaagc ... ggtgacacagGAGTATTGCTGTCCTGACACTTGGTGTGTAGAAGAAGGGCTATCTTCCTTT
EST: CTGGGTTCTTCAAG GAGTATTGCTGTCCTGACACTTGGTGTGTAGAAGAAGGGCTATCTTCCTTTEST: gi|208203877|gb|GE004848.1|GE004848
genomic: CTGGGTTCTTCAAGgttagaaagc ... ggtgacacagGAGTATTGCTGTCCTGACACTTGGTGTGTAGAAGAAGGGCTATCTTCCTTT
EST: CTGGGTTCTTCAAG GAGTATTGCTGTCCTGACACTTGGTGTGTAGAAGAAGGGCTATCTTCCTTT
genomic: CTGGGTTCTTCAAGgttagaaagc ... ggtgacacagGAGTATTGCTGTCCTGACACTTGGTGTGTAGAAGAAGGGCTATCTTCCTTT
ttgaaggtgtgaactttgatttgatgggtttgatttgtgtttggtggtgacacagGAGTATTGCTGTCCTGACACTTGGTGTGTAGAAGAAGGGCTATCTTCCTTTCTACCTGTGTTTTGCGTTGTGTACAAGAGTTTGAGAACTAACATCTGAT
gtttgat putative branch site (score: 5)
tttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttactcatagatctccaaagttttagtagttaataacattgttgaaggtgtgaactttgatttgatgggtttgatttgtgtttggtggtgacacagGAGTATTGCTGTCCTGACACTTGGTGTGTAGAAGAAGGGCTATCTTCCTTTCTACCTGTGTTTTGCGTTGTGTACAAGAGTTTGAGAACTAACATCTGAT
- - - - - - - - ctccaaa
- - - - - - - - - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtttg