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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcgcatgaaattttttcttagtttctgtactctaattcatctcctgttagttttttatggtggtaaataagagtaagaatctttcatctacattttgcagCATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATAATCACACCACAAAAGTTGTTTCTTCAGTTTGCTGCACTTTGTTATGGCT

Basic information

species Glycine max
transcript GLYMA16G26190.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298166106|gb|HO009077.1|HO009077
EST:     CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTG                         CATCGCAGCGCTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
genomic: CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTGgtacgttttt ... cattttgcagCATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
EST: gi|209729159|gb|BW660059.1|BW660059
EST:     CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTG                         CATCGCAGCGCTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
genomic: CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTGgtacgttttt ... cattttgcagCATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
EST: gi|209729160|gb|BW660060.1|BW660060
EST:     CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTG                         CATCGCAGCGCTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
genomic: CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTGgtacgttttt ... cattttgcagCATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
EST: gi|151405064|gb|EV274878.1|EV274878
EST:     CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTG                         CATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
genomic: CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTGgtacgttttt ... cattttgcagCATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
EST: gi|209711588|gb|BW676833.1|BW676833
EST:     CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTG                         CATCGCAGCGCTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
genomic: CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTGgtacgttttt ... cattttgcagCATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
EST: gi|193634643|gb|FK583438.1|FK583438
EST:     TGCTTTTCATTCCTGCGAGGCTG                         CATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
genomic: TGCTTTTCATTCCTGCGAGGCTGgtacgttttt ... cattttgcagCATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
EST: gi|254328344|gb|GR835309.1|GR835309
EST:     CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTG                         CATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
genomic: CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTGgtacgttttt ... cattttgcagCATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
EST: gi|298175589|gb|HO018300.1|HO018300
EST:     CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTG                         CATCGCAGCGCTTTGCTGCTGTTGTGTGCTAGAGGAGTGTCGCTTCTAATA
genomic: CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTGgtacgttttt ... cattttgcagCATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
EST: gi|209711587|gb|BW676832.1|BW676832
EST:     CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTG                         CATCGCAGCGCTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
genomic: CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTGgtacgttttt ... cattttgcagCATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
EST: gi|298178245|gb|HO023980.1|HO023980
EST:     CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCCGCGAGGCTG                         CATCGCAGCGCTTTGCTGCTGTTGCGTGCTAGAGGAGTGTTGCTTCTAATA
genomic: CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTGgtacgttttt ... cattttgcagCATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
EST: gi|254314226|gb|GR831855.1|GR831855
EST:     CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTG                         CATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
genomic: CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTGgtacgttttt ... cattttgcagCATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
EST: gi|19935453|gb|BQ080447.1|BQ080447
EST:     CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTG                         CATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
genomic: CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTGgtacgttttt ... cattttgcagCATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
EST: gi|254346148|gb|GR859761.1|GR859761
EST:     CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTG                         CATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA
genomic: CATCATCACCTCCACGATGAGCCCGGGTGCTTTTCATTCCTGCGAGGCTGgtacgttttt ... cattttgcagCATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttagttttttatggtggtaaataagagtaagaatctttcatctacattttgcagCATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATAATCACACCACAAAAGTTGTTTCTTCAGTTTGCTGCACTTTGTTATGGCT
     ttttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcgcatgaaattttttcttagtttctgtactctaattcatctcctgttagttttttatggtggtaaataagagtaagaatctttcatctacattttgcagCATCGCAGCACTTTGCTGCTGTTGTGTGCTAGAGGAGTGTTGCTTCTAATAATCACACCACAAAAGTTGTTTCTTCAGTTTGCTGCACTTTGTTATGGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- gcatgaa
- - - - - - - - - - gtttctg
- - - - - - - - - - - - - - - - - - - - ctcctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtggt