Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatatcacttatcaaaattgatgagaaaattatcctctgcgtggatacaatgaatctgacattttcatgctttcatctttttctgtgattgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAAGGACCAAGAAGCAGGATCCTGCATCAACATCAACTGCTGGACCTTCCAC

Basic information

species Glycine max
transcript GLYMA16G26150.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21675460|gb|BQ627811.1|BQ627811
EST:     GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAA                         GAAAGCAACTAATGGTATTTGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST: gi|209717177|gb|BW657642.1|BW657642
EST:     GTTGCTTAAGAAGGAGGATGGAACTCTCTTTAATTCCGCCATCTCATCAA                         GAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST: gi|192318355|gb|FK007273.1|FK007273
EST:     GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAA                         GAAAGCAACCAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST: gi|15816049|gb|BI788324.1|BI788324
EST:     GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAA                         GAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST: gi|15663888|gb|BI701259.1|BI701259
EST:     GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAA                         GAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST: gi|254339930|gb|GR858055.1|GR858055
EST:     GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAA                         GAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST: gi|298172737|gb|HO019777.1|HO019777
EST:     GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAA                         GAAAGCAACCAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST: gi|192332022|gb|FK024538.1|FK024538
EST:     GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAA                         GAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST: gi|192306088|gb|FG996548.1|FG996548
EST:     GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAA                         GAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST: gi|8286529|gb|BE024088.1|BE024088
EST:     GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAA                         GAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST: gi|213606235|gb|DB961351.1|DB961351
EST:     GTTGCTTAAGAAGGAGGATGGAACTCTCTTTAATTCCGCCATCTCATCAA                         GAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST: gi|33388581|gb|CA851788.1|CA851788
EST:     GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAA                         GAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST: gi|192332021|gb|FK024537.1|FK024537
EST:     GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAA                         GAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST: gi|298193197|gb|HO033631.1|HO033631
EST:     GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAA                         GAAAGCAACTAATGGTAAAGGCTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST: gi|192306087|gb|FG996547.1|FG996547
EST:     GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAA                         GAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacaatgaatctgacattttcatgctttcatctttttctgtgattgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAAGGACCAAGAAGCAGGATCCTGCATCAACATCAACTGCTGGACCTTCCAC
         atctgac  putative branch site (score: 3)
                                            ttgtttt  putative PPT
                attttcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaatatcacttatcaaaattgatgagaaaattatcctctgcgtggatacaatgaatctgacattttcatgctttcatctttttctgtgattgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAAGGACCAAGAAGCAGGATCCTGCATCAACATCAACTGCTGGACCTTCCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - -tgatgag
- - - - - - - - - - - - - - - - - cctctgc
- - - - - - - - - - - - - - - - - - - - - - - - caatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgaca