Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatctaattttatttcacttgaaaaagtgtggtatcagacattgtccccaatattaaaaaataaaagctctaatatgctgaaattacttatattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCTCAGGAATGGGCTGCAGTTCCTGGTGGCCAAGCAACCTACCTAGGCAACC

Basic information

species Glycine max
transcript GLYMA16G26130.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26130.2 (Glycine max), 3'ss of exon 2
lower sequence: AT3G54890.4 (Arabidopsis thaliana), 3'ss of exon 2
gatctaattttatttcacttgaaaaagtgtggtatcagacattgtccccaatattaaaaaataaaagctctaatatgctgaaattacttat--attttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCTCAGGAATGGGCTGCAGTTCCTGGTGGCCAAGCAACCTACCTAGGCAACC
              | | ||  || | |    | |  | | || ||   |   || |    |   |  | |||| |  || | ||  |      | ||| |||| ||||||||||| ||||| ||||| || |  || |||||||| ||||||||||||||||| ||| | || || || ||||| || ||| | || ||||
-------------gtaagtttcaata-tccaatctttgtc-ttatcataagggtttagtcttgttaagtttaatctaatggacttggtgggtggtgttgtagCCTGGGATTTTGGTACCAGAAGCATTAGGATATGGAAACTGGGTTAAGGCTCAGGAATGGGCAGCACTACCAGGGGGTCAAGCCACTTACTTGGGAAACC

upper sequence: GLYMA16G26130.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0019g04140.t01 (Vitis vinifera), 3'ss of exon 2
---------------------------------------------------------------------------------gatctaattttatttcacttgaaaaagtgtggtatcagacat---tgtccccaatattaaaaaa--taaaagctctaatatgctgaaattacttat---attttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCTCAGGAATGGGCTGCAGTTCCTGGTGGCCAAGCAACCTACCTAGGCAACC
                                                                                      || |  |    |    | ||| |   || ||||   |   | |      | || | |||  | ||| ||| | |    ||| ||   || |   ||||||||||| ||  |  | || ||||| || ||||||||||||||||||||| ||||||| || ||||| ||| |||| || |||||||| |||||| | |||||||
gtaagtttcatgcgaaaacccaaacttgggtggttgctacacttttgacgcgataacttcaattacttcctgcttggttgttgagaaaatggacgcaagaaaagaaaattgagtttcagctctacttatttttgtttttcataaagcttaaacctcaactgaaatgagatggtttctgtaattttgcagCCGGGAGTCCTAGTGCCAGAAGCCTTGGGCTTAGGCAACTGGGTACAGGCTCAAGAGTGGGCAGCAATTCCAGGAGGCCAAGCCACCTACTTGGGCAACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209697740|gb|BW655645.1|BW655645
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|20497858|gb|BQ272788.1|BQ272788
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|213604459|gb|DB970635.1|DB970635
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|31310624|gb|CD395827.1|CD395827
EST:     CTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: CTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|13251847|gb|BG362750.1|BG362750
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|213614001|gb|DB960966.1|DB960966
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|209708335|gb|BW683925.1|BW683925
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|7795609|gb|AW781006.1|AW781006
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|15288196|gb|BI472087.1|BI472087
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|151401807|gb|EV271620.1|EV271620
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|209714546|gb|BW662209.1|BW662209
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|17153968|gb|BM143901.1|BM143901
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|5606560|gb|AI900658.1|AI900658
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|209721878|gb|BW666447.1|BW666447
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|15285015|gb|BI468906.1|BI468906
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|209714532|gb|BW662208.1|BW662208
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|22525986|gb|BU084797.1|BU084797
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|213590446|gb|DB971902.1|DB971902
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|213611977|gb|DB964841.1|DB964841
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|209719839|gb|BW674991.1|BW674991
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|31308756|gb|CD393959.1|CD393959
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|7691300|gb|AW759493.1|AW759493
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|5760506|gb|AI965869.1|AI965869
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|17519514|gb|BM188556.1|BM188556
EST:     AGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|209726100|gb|BW675274.1|BW675274
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|213597323|gb|DB964396.1|DB964396
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|23052790|gb|BU577281.1|BU577281
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|19936938|gb|BQ081074.1|BQ081074
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|213615278|gb|DB963472.1|DB963472
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|23064494|gb|BU579267.1|BU579267
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|213617262|gb|DB972900.1|DB972900
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|9898757|gb|BE607725.1|BE607725
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|209717228|gb|BW657697.1|BW657697
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|9259114|gb|BE347261.1|BE347261
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|298180129|gb|HO025344.1|HO025344
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCATGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|213602815|gb|DB970534.1|DB970534
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|213610702|gb|DB961177.1|DB961177
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|213599093|gb|DB958354.1|DB958354
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|23727156|gb|BU761596.1|BU761596
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|192299119|gb|FG990419.1|FG990419
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|22525368|gb|BU084179.1|BU084179
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|213594509|gb|DB970047.1|DB970047
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|15285474|gb|BI469365.1|BI469365
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|20448793|gb|BQ252917.1|BQ252917
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|298178079|gb|HO027462.1|HO027462
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|213607305|gb|DB957141.1|DB957141
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|209704712|gb|BW656677.1|BW656677
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|5508958|gb|AI855516.1|AI855516
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|209723892|gb|BW682975.1|BW682975
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|22522379|gb|BU081190.1|BU081190
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|209729376|gb|BW663665.1|BW663665
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|15204740|gb|BI427508.1|BI427508
EST:     CTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: CTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|209711204|gb|BW683819.1|BW683819
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|209724483|gb|BW658200.1|BW658200
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|209721879|gb|BW666448.1|BW666448
EST:     TGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: TGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|213603108|gb|DB960413.1|DB960413
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|213594466|gb|DB970032.1|DB970032
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|213618332|gb|DB969358.1|DB969358
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|20815213|gb|BQ299691.1|BQ299691
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|10232608|gb|BE801496.1|BE801496
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|13481352|gb|BG510695.1|BG510695
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|213618461|gb|DB969403.1|DB969403
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|31464303|gb|CD406331.1|CD406331
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|20812909|gb|BQ297387.1|BQ297387
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|209714721|gb|BW674259.1|BW674259
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|151398535|gb|EV268406.1|EV268406
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|9899761|gb|BE608729.1|BE608729
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|209717227|gb|BW657696.1|BW657696
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|20813328|gb|BQ297806.1|BQ297806
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|31462609|gb|CD404637.1|CD404637
EST:     GTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCAATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCC-ATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
EST: gi|31311067|gb|CD396270.1|CD396270
EST:     GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTT                         CCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT
genomic: GGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTgtaagtgtct ... tattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccccaatattaaaaaataaaagctctaatatgctgaaattacttatattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCTCAGGAATGGGCTGCAGTTCCTGGTGGCCAAGCAACCTACCTAGGCAACC
                      ctctaat  putative branch site (score: 3)
     atattaaaaaataaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatctaattttatttcacttgaaaaagtgtggtatcagacattgtccccaatattaaaaaataaaagctctaatatgctgaaattacttatattttgcagCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCTCAGGAATGGGCTGCAGTTCCTGGTGGCCAAGCAACCTACCTAGGCAACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA