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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttgggttctccatataagtgtgattatgtaggttaccatactgtgaatatttcaaatttctttttagaacttattttcctgttctgttcattttgcagGACAATCCCATTTGCCTGGAATCTCATCACAGCTGGTTATGTTGAACAATCTATATATGGG

Basic information

species Glycine max
transcript GLYMA16G26110.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588267|gb|AW704066.1|AW704066
EST:     GTTCAGTTTTTCCCTTCAGCTGTTAACTACCTTGCTCTTATTCCCGCCAG                         GACAATCCCATTTGCCTGGAATCTCATCACAGCTGGTTATGTTGAACAATC
genomic: GTTCAGTTTTTCCCTTCAGCTGTTAACTACCTTGCTCTTATTCCCGCCAGgtaccgtgcc ... cattttgcagGACAATCCCATTTGCCTGGAATCTCATCACAGCTGGTTATGTTGAACAATC
EST: gi|192295151|gb|FG986870.1|FG986870
EST:     GTTCAATTTTTCCCTTCAACTGTTAACTACCTTGCTCTTATCCCCGCCAG                         GACAATCCCATTTGCCTGGAATCTCATCACAGCTGGTTATGTTGAACAATC
genomic: GTTCAGTTTTTCCCTTCAGCTGTTAACTACCTTGCTCTTATTCCCGCCAGgtaccgtgcc ... cattttgcagGACAATCCCATTTGCCTGGAATCTCATCACAGCTGGTTATGTTGAACAATC
EST: gi|17022945|gb|BM093979.1|BM093979
EST:     GTTCAGTTTTTCCCTTCAGCTGTTAACTACCTTGCTCTTATTCCCGCCAG                         GACAATCCCATTTGCCTGGAATCTCATCACAGCTGGTTATGTTGAACAATC
genomic: GTTCAGTTTTTCCCTTCAGCTGTTAACTACCTTGCTCTTATTCCCGCCAGgtaccgtgcc ... cattttgcagGACAATCCCATTTGCCTGGAATCTCATCACAGCTGGTTATGTTGAACAATC
EST: gi|193484251|gb|FK448577.1|FK448577
EST:     CTCTTATTCCCGCCAG                         GACAATCCCATTTGCCTGGAATCTCATCACAGCTGGTTATGTTGAACAATC
genomic: CTCTTATTCCCGCCAGgtaccgtgcc ... cattttgcagGACAATCCCATTTGCCTGGAATCTCATCACAGCTGGTTATGTTGAACAATC
EST: gi|15203857|gb|BI426625.1|BI426625
EST:     GTTCAGTTTTTCCCTTCAGCTGTTAACTACCTTGCTCTTATTCCCGCCAG                         GACAATCCCATTTGCCTGGAATCTCATCACAGCTGGTTATGTTGAACAATC
genomic: GTTCAGTTTTTCCCTTCAGCTGTTAACTACCTTGCTCTTATTCCCGCCAGgtaccgtgcc ... cattttgcagGACAATCCCATTTGCCTGGAATCTCATCACAGCTGGTTATGTTGAACAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaatatttcaaatttctttttagaacttattttcctgttctgttcattttgcagGACAATCCCATTTGCCTGGAATCTCATCACAGCTGGTTATGTTGAACAATCTATATATGGG
                              ttttcctgttctgttc  CT-rich tract
     atttcaaatttctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgttgggttctccatataagtgtgattatgtaggttaccatactgtgaatatttcaaatttctttttagaacttattttcctgttctgttcattttgcagGACAATCCCATTTGCCTGGAATCTCATCACAGCTGGTTATGTTGAACAATCTATATATGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
tgttggg
- - - -ttctcca
- - - - - - - - -aagtgtg
- - - - - - - - - - - - - tatgtag
- - - - - - - - - - - - - - - - - - -ccatact