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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatttgtttgaagcatcacttatcgctgggtcggccagcatgatatatattggtgttgtgtgattttgacatggttcttttcttcttctgaatttgcagCTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGATTTCTACATTGCTGGAGAAAGTTATGCAG

Basic information

species Glycine max
transcript GLYMA16G26070.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9440293|gb|BE440801.1|BE440801
EST:     ATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAG                         CTGAAGATGCATATACATTC
genomic: ATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAGgtaatgtagt ... gaatttgcagCTGAAGATGCATATACATTC
EST: gi|17022064|gb|BM093098.1|BM093098
EST:     ATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAG                         CTGAAGATGCATATACATTCCTTGTTAAT
genomic: ATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAGgtaatgtagt ... gaatttgcagCTGAAGATGCATATACATTCCTTGTTAAT
EST: gi|151399115|gb|EV268986.1|EV268986
EST:     ATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAG                         CTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTCCTCAGT
genomic: ATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAGgtaatgtagt ... gaatttgcagCTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTCCTCAGT
EST: gi|11413292|gb|BF425303.1|BF425303
EST:     ATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAG                         CTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTNCTCAGT
genomic: ATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAGgtaatgtagt ... gaatttgcagCTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTCCTCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatattggtgttgtgtgattttgacatggttcttttcttcttctgaatttgcagCTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGATTTCTACATTGCTGGAGAAAGTTATGCAG
                   ttttgac  putative branch site (score: 3)
 ttcttttcttcttctg  putative PPT
 tgatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaatttgtttgaagcatcacttatcgctgggtcggccagcatgatatatattggtgttgtgtgattttgacatggttcttttcttcttctgaatttgcagCTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGATTTCTACATTGCTGGAGAAAGTTATGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - ttgtttg
- - - - - - - - - - - - - - gggtcgg
- - - - - - - - - - - - - - - - - - - gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - ggtgttg