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...aaatttgtttgaagcatcacttatcgctgggtcggccagcatgatatatattggtgttgtgtgattttgacatggttcttttcttcttctgaatttgcagCTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGATTTCTACATTGCTGGAGAAAGTTATGCAG
species | Glycine max |
transcript | GLYMA16G26070.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAG CTGAAGATGCATATACATTCEST: gi|17022064|gb|BM093098.1|BM093098
genomic: ATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAGgtaatgtagt ... gaatttgcagCTGAAGATGCATATACATTC
EST: ATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAG CTGAAGATGCATATACATTCCTTGTTAATEST: gi|151399115|gb|EV268986.1|EV268986
genomic: ATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAGgtaatgtagt ... gaatttgcagCTGAAGATGCATATACATTCCTTGTTAAT
EST: ATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAG CTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTCCTCAGTEST: gi|11413292|gb|BF425303.1|BF425303
genomic: ATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAGgtaatgtagt ... gaatttgcagCTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTCCTCAGT
EST: ATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAG CTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTNCTCAGT
genomic: ATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAGgtaatgtagt ... gaatttgcagCTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTCCTCAGT
atatattggtgttgtgtgattttgacatggttcttttcttcttctgaatttgcagCTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGATTTCTACATTGCTGGAGAAAGTTATGCAG
ttttgac putative branch site (score: 3)
ttcttttcttcttctg putative PPT
tgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatttgtttgaagcatcacttatcgctgggtcggccagcatgatatatattggtgttgtgtgattttgacatggttcttttcttcttctgaatttgcagCTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGATTTCTACATTGCTGGAGAAAGTTATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - ttgtttg
- - - - - - - - - - - - - - gggtcgg
- - - - - - - - - - - - - - - - - - - gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - ggtgttg