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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattacatgttacatatatccatcattgtcttagttgtcaattactagcgaattaaagtaatatgctggaaagtcttcgaagtttttcaaatcttcaataaaaacaaattaatatacggattggattttgcagGACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAAGACTTGACTAAACAAAAGAACTTCTCCAAAGAGGGATATGGGTCAGTTC

Basic information

species Glycine max
transcript GLYMA16G26060.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192328490|gb|FK023522.1|FK023522
EST:     TGTCCGACAAGCTCTACCAACTGTCCCCTATTGAG                         GACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA
genomic: TGTCCGACAAGCTCTACCAACTGTCCCCTATTGAGgtaattacat ... gattttgcagGACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA
EST: gi|192316230|gb|FK011631.1|FK011631
EST:     ACAAGCTTTACCAACTGTCCCCTATTGAG                         GACTTGGAATTGGCCAAGACTCTAGCAAGGCCATCATCGCTTTTCATGGAA
genomic: ACAAGCTCTACCAACTGTCCCCTATTGAGgtaattacat ... gattttgcagGACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA
EST: gi|192304668|gb|FG998740.1|FG998740
EST:     TCGGCCCCAACTTCTTGTCCGACAAGCTCTACCAACTGTCCCCTATTGAG                         GACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA
genomic: TCGGCCCCAACTTCTTGTCCGACAAGCTCTACCAACTGTCCCCTATTGAGgtaattacat ... gattttgcagGACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA
EST: gi|192316231|gb|FK011632.1|FK011632
EST:     TCGGCCCCAACTTCTTGTCCGACAAGCTCTACCAACTGTCCCCTATTGAG                         GACTTGGAATTGGCCAAGACTCTAGCAAGGCCATCATCGCTCTTCATGGAA
genomic: TCGGCCCCAACTTCTTGTCCGACAAGCTCTACCAACTGTCCCCTATTGAGgtaattacat ... gattttgcagGACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA
EST: gi|37996785|gb|CF808374.1|CF808374
EST:     TCGGCCCCAACTTCTTGTCCGACAAGCTCTACCAACTGTCCCCTATTGAG                         GACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA
genomic: TCGGCCCCAACTTCTTGTCCGACAAGCTCTACCAACTGTCCCCTATTGAGgtaattacat ... gattttgcagGACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA
EST: gi|192294575|gb|FG986424.1|FG986424
EST:     TCGGCCCCAACTTCTTGTCCGACAAGCTCTACCAACTGTCCCCTATTGAG                         GACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA
genomic: TCGGCCCCAACTTCTTGTCCGACAAGCTCTACCAACTGTCCCCTATTGAGgtaattacat ... gattttgcagGACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA
EST: gi|151402824|gb|EV272637.1|EV272637
EST:     TCGGCCCCAACTTCTTGTCCGACAAGCTCTACCAACTGTCCCCTATTGAG                         GACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA
genomic: TCGGCCCCAACTTCTTGTCCGACAAGCTCTACCAACTGTCCCCTATTGAGgtaattacat ... gattttgcagGACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA
EST: gi|192328489|gb|FK023521.1|FK023521
EST:     TCGGCCCCAACTTCTTGTCCGACAAGCTCTACCAACTGTCCCCTATTGAG                         GACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA
genomic: TCGGCCCCAACTTCTTGTCCGACAAGCTCTACCAACTGTCCCCTATTGAGgtaattacat ... gattttgcagGACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA
EST: gi|14990490|gb|BI316163.1|BI316163
EST:     TCGGCCCCAACTTCTTGTCCGACAAGCTTTACCAACTGTCCCCTATTGAG                         GACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA
genomic: TCGGCCCCAACTTCTTGTCCGACAAGCTCTACCAACTGTCCCCTATTGAGgtaattacat ... gattttgcagGACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA
EST: gi|192328359|gb|FK020070.1|FK020070
EST:     TCGGCCCCAACTTCTTGTCCGACAAGCTCTACCAACTGTCCCCTATTGAG                         GACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA
genomic: TCGGCCCCAACTTCTTGTCCGACAAGCTCTACCAACTGTCCCCTATTGAGgtaattacat ... gattttgcagGACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA
EST: gi|192304669|gb|FG998741.1|FG998741
EST:     AAGCTTTACCAACTGTCCCCTATTGAG                         GACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTTTTCATGGAA
genomic: AAGCTCTACCAACTGTCCCCTATTGAGgtaattacat ... gattttgcagGACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagtttttcaaatcttcaataaaaacaaattaatatacggattggattttgcagGACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAAGACTTGACTAAACAAAAGAACTTCTCCAAAGAGGGATATGGGTCAGTTC
                            aattaat  putative branch site (score: 3)
     ttttcaaatcttcaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattacatgttacatatatccatcattgtcttagttgtcaattactagcgaattaaagtaatatgctggaaagtcttcgaagtttttcaaatcttcaataaaaacaaattaatatacggattggattttgcagGACTTGGAATTGGCCAAGACTTTAGCAAGGCCATCATCGCTCTTCATGGAAGACTTGACTAAACAAAAGAACTTCTCCAAAGAGGGATATGGGTCAGTTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG