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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtattttatcacccttatctatttcttaatcttattgatcaatctatgtaataaggaacataattgtttcatgtcacgtacataaatttgttttcagGTGAATAGAATAGGAATGGATGTTCAAATAGATTACTTCAGCATTACAAGAAAACAAATTGACAAACTGCTGGGTAAATCAAAAGCGAAAGAGTACATAA

Basic information

species Glycine max
transcript GLYMA16G26020.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408819|gb|EV278627.1|EV278627
EST:     ATTATGCTTCAGGAGGAGGAGGAATACTGAATGCTACCGGAAGAATATTT                         GTGAATAGAATAGGAATGGATGTTCAAATAGATTACTTCAGCATCACAAGA
genomic: ATTATGCTTCAGGAGGAGGAGGAATACTGAATGCTACCGGAAGAATATTTgtcagtattt ... ttgttttcagGTGAATAGAATAGGAATGGATGTTCAAATAGATTACTTCAGCATTACAAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatgtaataaggaacataattgtttcatgtcacgtacataaatttgttttcagGTGAATAGAATAGGAATGGATGTTCAAATAGATTACTTCAGCATTACAAGAAAACAAATTGACAAACTGCTGGGTAAATCAAAAGCGAAAGAGTACATAA
                                            tttgttttc  CT-rich tract
                                    tacataaatttgtttt  TA-rich tract