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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaagaaacgacgacatttggtagttttcgctttaccaaattaattttccctcttcatatatacaattgttagttatacattgattgactgaaaactcattaattaatttctatggttcagAGGAGAAGTTGGAAAATGGATTGCATTCATCGCAGTCGTGTTGAGGCTCTTTTTCCCTAGACATTTTCCCG

Basic information

species Glycine max
transcript GLYMA16G25870.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25870.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0207g00220.t01 (Vitis vinifera), 3'ss of exon 2
gtaataaagaaacgacgacatttggtagttttcgctttaccaaattaattttccctcttcatatatacaattgttagttatacattgattgactgaaaactcattaat-----taatttc--tatggttcagAGGAGAAGTTGGAAAATGGATTGCATTCATCGCAGTCGTGTTGAGGCTCTTTTTCCCTAGACATTTTCCCG
                                                |||   || ||  |     ||    ||  || |   ||  ||  |||| | || ||||||     ||||||   |||||| ||||||||| ||||||||||||||||| ||||| ||| | ||  | ||||| || |||||||||||||| || |
-----------------------------------------------gtttcatcttttactgatcgcacacttttattctcttttatttttctgatatcttattaatagaactaattttattatggtccagAGGAGAGGTTGGAAAATGGATTGCTTTCATTGCAATTGTACTAAGGCTTTTCTTCCCTAGACATTTCCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttagttatacattgattgactgaaaactcattaattaatttctatggttcagAGGAGAAGTTGGAAAATGGATTGCATTCATCGCAGTCGTGTTGAGGCTCTTTTTCCCTAGACATTTTCCCG
                                   aattaat  putative branch site (score: 3)
                                         tttctat  CT-rich tract
                         aaaactcattaattaa  TA-rich tract