1 5' 3' | 2 5' 3' | 3 5' 3' |
...cggtaaaatttatgcagcttgatttctcgagtgtaaaaggaagtgacagagtaaatcaaatgattagtttacttactatgtgtttggtttcttggtccagGGACTACATGCCATTAATTTGGGTGACAGTGGGTTCATCGTGGTTAGAGATGGATGCACCATTTTCAGGTCCCCTGTTCAACAGCATGGCTTCAATTTTA
species | Glycine max |
transcript | GLYMA16G25560.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAAGGCCAAGGGTTCATCAACAGCTTGTATCATTACCCTTACTGACACG GGACTACATGCCATTAATTTGGGTGACAGTGGGTTCATCGTGGTTAGAGATEST: gi|151409984|gb|EV279792.1|EV279792
genomic: CAAAGGCCAAGGGTTCATCAACAGCTTGTATCATTACCCTTACTGACACGgtatacatat ... cttggtccagGGACTACATGCCATTAATTTGGGTGACAGTGGGTTCATCGTGGTTAGAGAT
EST: CAAAGGCCAAGGGTTCATCAACAGCTTGTATCATTACCCTTACTGACACG GGACTACATGCCATTAATTTGGGTGACAGTGGGTTCATCGTGGTTAGAGATEST: gi|51345245|gb|CO985978.1|CO985978
genomic: CAAAGGCCAAGGGTTCATCAACAGCTTGTATCATTACCCTTACTGACACGgtatacatat ... cttggtccagGGACTACATGCCATTAATTTGGGTGACAGTGGGTTCATCGTGGTTAGAGAT
EST: CAAAGGCCAAGGGTTCATCAACAGCTTGTATCATTACCCTTACTGACACG GGACTACATGCCATTAATTTEST: gi|31306700|gb|CD391903.1|CD391903
genomic: CAAAGGCCAAGGGTTCATCAACAGCTTGTATCATTACCCTTACTGACACGgtatacatat ... cttggtccagGGACTACATGCCATTAATTT
EST: CTTGTATCATTACCCTTACTGACACG GGACTACATGCCATTAATTTGGGTGACAGTGGGTTCATCGTGGTTAGAGAT
genomic: CTTGTATCATTACCCTTACTGACACGgtatacatat ... cttggtccagGGACTACATGCCATTAATTTGGGTGACAGTGGGTTCATCGTGGTTAGAGAT
acagagtaaatcaaatgattagtttacttactatgtgtttggtttcttggtccagGGACTACATGCCATTAATTTGGGTGACAGTGGGTTCATCGTGGTTAGAGATGGATGCACCATTTTCAGGTCCCCTGTTCAACAGCATGGCTTCAATTTTA
tacttac putative branch site (score: 1)
tttctt putative PPT
taaatcaaatgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggtaaaatttatgcagcttgatttctcgagtgtaaaaggaagtgacagagtaaatcaaatgattagtttacttactatgtgtttggtttcttggtccagGGACTACATGCCATTAATTTGGGTGACAGTGGGTTCATCGTGGTTAGAGATGGATGCACCATTTTCAGGTCCCCTGTTCAACAGCATGGCTTCAATTTTA
- - - - - - tgcagct
- - - - - - - - - - - - - - - - - aaaaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtttg