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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtgtttgtttatccaataaggatttgtttttagagcaatgaattggctttgcctcaaatggcaaagcagtaaagagtgcaagatagcgactaatttgaaattgtgaaactgtttatttatttggcagGAACTTTATGGACCTTCTGTTGTCCCCAGCTTCTAAGGTTTTGAACAACTGGTTTGAG

Basic information

species Glycine max
transcript GLYMA16G25390.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25390.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0023g01790.t01 (Vitis vinifera), 3'ss of exon 3
gtaagtgtgtttgtttatccaataaggatttgtttttagagcaatgaattggctttgc-ctcaaatggcaaagcagtaaagagtgcaagatagcgactaatttgaaattgtgaaactgtttatttattt-ggcagGAACTTTATGGACCTTCTGTTGTCCCCAGCTTCTAAGGTTTTGAACAACTGGTTTGAG
                              |  | ||| |  |     |    |   | ||  |||  |  |    | |  | |   || ||   |||  ||   ||      ||||    |||||||| | |||| ||||| |||||||||||||||||||| |||| |||||||||||| |||||||||||
------------------------------tcctcttataataccatgtcaattcctctcttgaataacttatggctgagtatttgtagttacttactctttcttaac-----aacttacaatttattttgacagGGACTTTGTGGACCTTCTGTTGTCCCCAACTTCAAAGGTTTTGAACTACTGGTTTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagtgcaagatagcgactaatttgaaattgtgaaactgtttatttatttggcagGAACTTTATGGACCTTCTGTTGTCCCCAGCTTCTAAGGTTTTGAACAACTGGTTTGAG
               gactaat  putative branch site (score: 2)
                                       tttattt  putative PPT
                                 aaactgtttatttatt  TA-rich tract