1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaataaattcttaaccctttttctggcctaatgttctccttttttttcctttgtggttttaacttttaatgtttcttgtgtttgttttctttatgtgtatgaatagCCGGGTCCGCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAAAGAAACTTCTACATATCTATTGTACTTTGGTCTGGTTCCAT
species | Glycine max |
transcript | GLYMA16G25210.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGACTCCTGAACAATGTGGAAGGATCACATTTCCCATTTCATTGAAGCAG CCGGGTCCGCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAAAGAAEST: gi|207766634|gb|GD738262.1|GD738262
genomic: AGACTCCTGAACAATGTGGAAGGATCACATTTCCCATTTCATTGAAGCAGgtaataaatt ... gtatgaatagCCGGGTCCGCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAAAGAA
EST: AGACTCCTGAACAATGTGGAAGGATCACATTTCCCATTTCATTGAAGCAG CCGGGTCCGCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAAAGAAEST: gi|208132977|gb|GD931652.1|GD931652
genomic: AGACTCCTGAACAATGTGGAAGGATCACATTTCCCATTTCATTGAAGCAGgtaataaatt ... gtatgaatagCCGGGTCCGCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAAAGAA
EST: TTTCCCATTTCATTGAAGCAG CCGGGTCCGCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAAAGAAEST: gi|207767951|gb|GD739355.1|GD739355
genomic: TTTCCCATTTCATTGAAGCAGgtaataaatt ... gtatgaatagCCGGGTCCGCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAAAGAA
EST: AGACTCCTGAACAATGTGGAAGGATCACATTTCCCATTTCATTGAAGCAG CCGGGTCCGCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAAAGAAEST: gi|207833387|gb|GD804518.1|GD804518
genomic: AGACTCCTGAACAATGTGGAAGGATCACATTTCCCATTTCATTGAAGCAGgtaataaatt ... gtatgaatagCCGGGTCCGCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAAAGAA
EST: AGACTCCTGAACAATGTGGAAGGATCACATTTCCCATTTCATTGAAGCAG CCGGGTCCGCGTGATTCTCCAATAACAGTGCTTTATCAGGAGGAACAAAGAEST: gi|5606013|gb|AI900111.1|AI900111
genomic: AGACTCCTGAACAATGTGGAAGGATCACATTTCCCATTTCATTGAAGCAGgtaataaatt ... gtatgaatagCCGGGTCCGCGTGATTCTCCAATA-CAGTGCTTTATCAGGAGGAACAAAGA
EST: AGACTCCTGAACAATGTGGAAGGATCACATTTCCCATTTCATTGAAGCAG CCGGGTCCGCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAAAGAA
genomic: AGACTCCTGAACAATGTGGAAGGATCACATTTCCCATTTCATTGAAGCAGgtaataaatt ... gtatgaatagCCGGGTCCGCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAAAGAA
tgtggttttaacttttaatgtttcttgtgtttgttttctttatgtgtatgaatagCCGGGTCCGCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAAAGAAACTTCTACATATCTATTGTACTTTGGTCTGGTTCCAT
ttttaacttttaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataaattcttaaccctttttctggcctaatgttctccttttttttcctttgtggttttaacttttaatgtttcttgtgtttgttttctttatgtgtatgaatagCCGGGTCCGCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAAAGAAACTTCTACATATCTATTGTACTTTGGTCTGGTTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA