1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcaatgtattctaacatgccgaatcacatttgagtttatgatttgtgttgaatgttgctttatatatgcttacgtgcacagaaatggaatttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGAGGGGTCATAAAATACATTATGTAGTGCAAGGAGAAGGCTCTCCCATTGT
species | Glycine max |
transcript | GLYMA16G25200.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGAEST: gi|209728317|gb|BW658529.1|BW658529
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGAEST: gi|209725699|gb|BW663190.1|BW663190
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGAEST: gi|192301616|gb|FG998468.1|FG998468
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGAEST: gi|18692833|gb|BM521681.1|BM521681
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGAEST: gi|151399533|gb|EV269404.1|EV269404
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGAEST: gi|213591367|gb|DB955715.1|DB955715
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGAEST: gi|20448288|gb|BQ252412.1|BQ252412
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGAEST: gi|13125828|gb|BG316398.1|BG316398
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGAEST: gi|151405996|gb|EV275811.1|EV275811
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGAEST: gi|120529684|gb|EH257818.1|EH257818
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGAEST: gi|20814627|gb|BQ299105.1|BQ299105
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: TTCGGTCTCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGAEST: gi|209716247|gb|BW657550.1|BW657550
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
tgttgaatgttgctttatatatgcttacgtgcacagaaatggaatttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGAGGGGTCATAAAATACATTATGTAGTGCAAGGAGAAGGCTCTCCCATTGT
tgcttac putative branch site (score: 2)
tttatatatgctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatgtattctaacatgccgaatcacatttgagtttatgatttgtgttgaatgttgctttatatatgcttacgtgcacagaaatggaatttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGAGGGGTCATAAAATACATTATGTAGTGCAAGGAGAAGGCTCTCCCATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - tgtattc
- - - - - - -acatgcc
- - - - - - - - - - -aatcaca
- - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcacag