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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgcatttttagttcactcctgttgattatgaatttactaatagtaatttaagcttcattttgacgaattgaatatgacatgccggtaactcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC

Basic information

species Glycine max
transcript GLYMA16G24220.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os11g06890.1 (Oryza sativa), 3'ss of exon 2
-atgcatttttagttcactcctgttgattatgaatttactaatagtaatttaagcttcattttgacgaat-tgaatatgacatgccggtaactcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC
  |   | || |   |   ||| |   ||  ||  ||     || |    |||||| | |  |   || |   | | ||| ||  |         || |||| |||||||| ||||| ||||||||||| || || ||||| |||||||||||||| || || ||| | ||  | || ||||||||||| ||||||||||||
cctcggtgttcatgactaccctttgtgttgagagcttgaggctact--cctaagctgcctactttggattacaattctgatatctcttgttggtgttggcagGGCAAATGCACAGCAACCAAAGCTTTTCGTGGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCCCTGTATGGTCTCATTGTGGGCATCATCCTC

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os02g34510.1 (Oryza sativa), 3'ss of exon 1
atgcatttttagttcactcctgttgattatgaatttactaatagtaattt--aagcttcattttgacgaattgaatatgacatgccggtaactcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC
||    |   | ||    |   ||||||   |    |  |||  | ||||  | ||||   || |  |   ||  | | ||||         |   |  ||| ||||||||||| |||||||| || ||||| || ||||| |||||||| || ||||| || ||| | ||| | || |||||||||||||| |||||| | 
atttcatgacactttgtgcagcttgattggaaccacaggaattttgatttttatgctttgctt-ggtgcgctgt-tctaacataatctacttttgctctcagGGCAAATGCTCAACAGCCAAAACTGTTTGTGGGTATGATCCTCATCCTTATCTTTGCGGAAGCGCTTGCACTCTATGGTCTCATTGTTGGTATCATCTTG

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G028432_T01 (Zea mays), 3'ss of exon 1
atgcatttttagttcactcctgttgattatgaatttactaatagtaatttaagcttcattt-tgacgaattgaatatgacatgccggtaactcttttgc--agAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC
   || ||  |      ||||  |    |  |    | |   |         ||| | |    | |||  |        | || |  |   ||||||||  || || || ||||||||||||||||| ||||| || ||||| ||||||||||| || ||||| ||| | ||  ||||||||||||| || ||||||||||||
---cacttaaacacttgtcctacttgggaaaatcggattgtcaaccgggctggctgcctagacggcgacatctcctcatcctgacacttgttcttttgcgcagGGCGAACGCTCAGCAGCCAAAGCTGTTTGTGGGCATGATCCTCATCCTCATCTTCGCTGAAGCGCTCGCCCTATACGGTCTCATCGTCGGCATCATCCTC

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
----atgcatttttagttcactcctgttgattatgaatttactaa-------tagtaatttaagcttcattttgacgaattgaatatgacatgccggtaactcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC
       ||  |  |  |  ||||||  | || |   |||||  |       | | |||| ||  || | |||||| ||||   | ||     ||| |        | ||| |||||||| || |||||||||||||| ||||| ||||| |||||||||||||| || || ||| | ||  | || ||||| |||||||| || ||||| 
agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatt---tttgggccaccgat--------ttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: AC216067.3_FGT002 (Zea mays), 3'ss of exon 2
----atgcatttttagttcactcctgttgattatgaatttactaatagtaatttaagcttcattttgacgaattgaatatgacatgccggtaactcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC
     | | || || |  |  | ||  |  | | ||        ||  | ||||  |    |||   |     |  |  |    |   ||  |||  ||| ||| || ||||| || ||||| ||||||||||| || ||||| |||||||||||||| || || ||| | ||  | ||||||||||||||||| || ||||| 
taatctcctttctttgagcgtttcttcttttaaggaggcagtacatgcttatttggga---attgaaattttattgacttattttctgggccactgattt-cagGGCGAATGCACAACAGCCGAAGCTTTTTGTGGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTGTACGGTCTCATTGTTGGAATTATCCTT

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 2
atgcatttttagttcactcctg--ttgattatgaatttactaatagtaattta--agcttcattttgacgaattgaatatgacatgccggtaactctttt--gcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC
     ||   ||     ||||   | ||  || |  |||  ||  | ||  |     ||  |    | | |  |   |  | | |  |  |   ||||||  |||| || || ||||||||||| ||| | |||||||| ||||| |||||||| ||||||||||| ||  | ||  | || |||||||| || ||||| ||||||
-----ttcaaagagttgtcctagttcgaaaattatattatcaactggaacctgtctactctagaccg-caacatctctccgtcctaacacttgttcttttgtgcagGGCGAACGCTCAGCAGCCGAAGTTGTTTGTTGGCATGATCCTCATCCTTATTTTTGCTGAAGCACTTGCCCTCTATGGTCTCATCGTCGGCATTATCCTC

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G75630.2 (Arabidopsis thaliana), 3'ss of exon 3
--------------------------------------------------------------------------------------------atgcatttttagttcactcctgttgattatgaatttactaatagtaattta-agcttcattttgacgaattgaatatgacatgccggtaactc-ttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC
                                                                                            |      ||        | || ||| ||     |  |  ||   ||  | | ||| |||||  ||    |    | | | ||  |  |  ||  ||||||||||| ||||| || || || ||||| ||||| |||||||| || || ||||| ||||| || ||| | ||| | || |||||||||||||| |||||||||
gtaacgttgtttgatattagatttggtgttggttaagaactgtctggattgaatctttgaagcagattaggataaattaccagtagaattcaacaggcgttgcacctgatgct-ttgttttcttttacatcaactatatgtgacagcatcattcagaactctgttttgtta-atctcaatgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G19910.1 (Arabidopsis thaliana), 3'ss of exon 2
atgcatttttagttcactcctgttgattatgaatttactaatagtaatttaagcttca-----ttttgacgaattgaatatgacatgccggtaactcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC
    | |   || || ||  | ||| || | | |||    || | || |  || ||       | ||      ||| |  |    ||   ||   | | ||||||||| ||||| || || || ||| | ||||| |||||||| || || ||||| |||||||| ||  | ||  | ||||||||||||||||| |||||||||
--atagtcgcagctc-ctgatattg-ttgtaagtttttgtatgg-aactcgagttttgaaaggtgttatgtgtttgtaattctggtgtgtgtttttgtgttgcagAGCGAATGCACAACAACCTAAGTTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCTGAAGCACTTGCCCTGTACGGTCTCATTGTTGGTATCATCCTC

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
atgcatttttagttcactcctgttgattatgaatttactaatagtaattta-agcttcattttgacgaattgaatatgacatgccggtaactc-ttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC
|      ||        | || ||| ||     |  |  ||   ||  | | ||| |||||  ||    |    | | | ||  |  |  ||  ||||||||||| ||||| || || || ||||| ||||| |||||||| || || ||||| ||||| || ||| | ||| | || |||||||||||||| |||||||||
acaggcgttgcacctgatgct-ttgttttcttttacatcaactatatgtgacagcatcattcagaactctgttttgtta-atctcaatgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 2
---------------------------------------------------------------------------------atgcatttttagttcactcctgttgattatgaatttactaatagtaatttaagcttcatt--ttgacgaattgaat-atgacatgccggtaactcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC
                                                                                  |     |||| ||   | ||||  |||   | | | |     || ||  ||  ||  ||   ||| | |||   | |    ||   ||| |  | | || ||||| ||||| |||||||| ||||| || ||||| |||||  | |||||||||||||| |||||| | || || || || || || || ||||||||| | 
gtagtaatcccgtctctacgtttttctgcatttagtatttttctttttttcttcttttttttttctgcttgatatgatttcctattgctttatttattttctgtgaattgccattatgcatcatgtgatgcaatttttgttacctgatgtattctttgaccggattatggttatacgtctgtagAGCGAATGCCCAGCAGCCCAAGCTCTTCGTTGGTATGATTTTGATCCTCATTTTTGCCGAGGCGCTTGCTTTGTATGGACTTATCGTCGGCATCATCTTG

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S45_100V6.1 (Physcomitrella patens), 3'ss of exon 2
--------------------------------------------------------------------------------atgcatttttagttcactcctgttgat---tatgaattt-----actaatagtaatttaagcttcattttgacgaattgaatatg---------acatgccgg-taac-tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC
                                                                                ||| |||   ||     ||  | ||||    ||||  ||     |   | ||| | ||| |      ||||  |  |||   |||         || ||  || |  | || ||||||| || |||||||||||||| ||||| || || || ||||| || ||||||||||| ||||||||| | || || || || || || || ||||| ||| | 
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagttatgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
--------------------------------------------------------------------------------atgcatttttagttcactcctgttgat---tatgaattt-----actaatagtaatttaagcttcattttgacgaattgaatatg---------acatgccgg-taac-tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC
                                                                                ||| |||   ||     ||  | ||||    ||||  ||     |   | ||| | ||  |      ||||  |  |||   |||         || ||  || |  | || ||||||| || |||||||||||||| ||||| || || || ||||| || ||||||||||| ||||||||| | || || || || || || || ||||| ||| | 
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagttgtgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 2
atgcatttttagttcactcctgttgattatgaattt-actaatagtaatttaagcttcattttgacgaattgaatatgacatgccggtaactcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC
                             | | ||  |   ||   ||   |   ||   || ||    |  |   |||   |   ||   ||||| |||| || ||||| ||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||| |||||  |||||||||||||||| || |||||||| 
----------------------------gtaagttcgatcgatcaaaagccatctttttcttcgatatctccat--tgattggtttgtttttcttt-gcagGGCGAATGCGCAGCAACCCAAGCTTTTTGTTGGAATGATCCTCATTCTCATCTTTGCCGAGGCTTTGGCTCTATACGGTCTCATTGTGGGAATCATCCTG

upper sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 2
atgcatttttagttcactcctgttgattatgaattt-actaatagtaatttaagcttcattttgacgaattgaatatgacatgccggtaactcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC
                             | | ||  |   ||   ||   |   ||   || ||    |  |   |||   |   ||   ||||| |||| || ||||| ||||| || |||||||||||||||||||| || || ||||| ||||| ||||| |||||  |||||||||||||||| || |||||||| 
----------------------------gtaagttcgatcgatcaaaaaccatctttttcttcgatatctccat--tgattggtttgtttttcttt-gcagGGCGAATGCGCAGCAACCCAAGCTTTTTGTTGGAATGATCCTGATTCTCATCTTTGCCGAGGCTTTGGCTCTATACGGTCTCATTGTGGGAATCATCCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213620504|gb|DB957348.1|DB957348
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|4396139|gb|AI495136.1|AI495136
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCANATGCTCAGCAGCCAAAGCTTTNTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|207821625|gb|GD796010.1|GD796010
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|4293464|gb|AI437909.1|AI437909
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|21677610|gb|BQ629961.1|BQ629961
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|213616647|gb|DB969171.1|DB969171
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|209719560|gb|BW651012.1|BW651012
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|254335335|gb|GR846832.1|GR846832
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|10844231|gb|BF067545.1|BF067545
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGATGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATACTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|14125192|gb|BG789630.1|BG789630
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|58016922|gb|CX703664.1|CX703664
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|58017335|gb|CX704077.1|CX704077
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|254335334|gb|GR846831.1|GR846831
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|10235471|gb|BE804359.1|BE804359
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|5666609|gb|AI930645.1|AI930645
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|213607931|gb|DB959186.1|DB959186
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|31473807|gb|CD415835.1|CD415835
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCCAATGCTCAGCAGCCCAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|209719561|gb|BW651013.1|BW651013
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|18735424|gb|BM528757.1|BM528757
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|213591837|gb|DB977293.1|DB977293
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|213591773|gb|DB975658.1|DB975658
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|14125269|gb|BG789707.1|BG789707
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|9901554|gb|BE610522.1|BE610522
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTGTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|18712870|gb|BM522688.1|BM522688
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|10847454|gb|BF071547.1|BF071547
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
EST: gi|33388551|gb|CA851758.1|CA851758
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttaagcttcattttgacgaattgaatatgacatgccggtaactcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC
                                      cggtaac  putative branch site (score: 3)
                                            ctcttttgc  CT-rich tract
                     aattgaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgcatttttagttcactcctgttgattatgaatttactaatagtaatttaagcttcattttgacgaattgaatatgacatgccggtaactcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC

-tgcattt
- - - - - - - - ctcctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgcc