1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaggaggagcactgttgccaaccacaatttcttgtgatctacctccatatccagtctcatgctgagtgctatttacttaactatacctatattctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAGCAAAGAACAGGAACAAACCCTGTCAAGAAGCAGCATTGTGACTACACAA
species | Glycine max |
transcript | GLYMA16G24130.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAG ATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAGEST: gi|213610254|gb|DB958823.1|DB958823
genomic: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAGgtaggaggag ... attctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
EST: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAG ATCTATTATTTTTGTTAATGGAACCEST: gi|27425046|gb|CA936566.1|CA936566
genomic: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAGgtaggaggag ... attctggcagATCTATTATTTTTGTTAATGGAACC
EST: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAG ATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAGEST: gi|298187878|gb|HO031835.1|HO031835
genomic: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAGgtaggaggag ... attctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
EST: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAG ATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAGEST: gi|298181497|gb|HO022936.1|HO022936
genomic: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAGgtaggaggag ... attctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
EST: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAG ATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
genomic: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAGgtaggaggag ... attctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
catatccagtctcatgctgagtgctatttacttaactatacctatattctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAGCAAAGAACAGGAACAAACCCTGTCAAGAAGCAGCATTGTGACTACACAA
acttaac putative branch site (score: 3)
tatttacttaactata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggaggagcactgttgccaaccacaatttcttgtgatctacctccatatccagtctcatgctgagtgctatttacttaactatacctatattctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAGCAAAGAACAGGAACAAACCCTGTCAAGAAGCAGCATTGTGACTACACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC