1 5' 3' | 2 5' 3' |
...acattttcttgcctatggggtttaatatttaattttaattctcatgcagttggtttatttatttcttttttaaaactaaagatgcatttgtcttgagcagGTTAGTTGGAAAGACTACCCAATTGGAAGGTGAGAAAATGCAGAAAGAGGCTGAAGTACAGAAACTTATGGAAGAGAATGTGAGGTTGAGTGCTCTGCTT
species | Glycine max |
transcript | GLYMA16G23960.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTACTTTCTTCAGAGAAGCAATTCCAAACTATTGAGAAGCTGTTTGAGCG GTTAGTTGGAAAGACTACCCAATTGGAAGGTGAGAAAATGCAGAAAGAGGCEST: gi|151400119|gb|EV269933.1|EV269933
genomic: TTACTTTCTTCAGAGAAGCAATTCCAAACTATTGAGAAGCTGTTTGAGCGgtaaacatat ... tcttgagcagGTTAGTTGGAAAGACTACCCAATTGGAAGGTGAGAAAATGCAGAAAGAGGC
EST: TTACTTTCTTCAGAGAAGCAACTCCAAACTATTGAGAAGCTGTTTGAGCG GTTAGTTGGAAAGACTACCCAATTGGAAGGTGAGAAAATGCAGAAAGAGGCEST: gi|10847849|gb|BF071622.1|BF071622
genomic: TTACTTTCTTCAGAGAAGCAATTCCAAACTATTGAGAAGCTGTTTGAGCGgtaaacatat ... tcttgagcagGTTAGTTGGAAAGACTACCCAATTGGAAGGTGAGAAAATGCAGAAAGAGGC
EST: TTACTTTCTTCAGAGAAGCAATTCCAAACTATTGAGAAGCTGTTTGAGCG GTTAGTTGGAAAGACTACCCAATTGGAAGGTGAGAAAATGCAGAAAGAGGC
genomic: TTACTTTCTTCAGAGAAGCAATTCCAAACTATTGAGAAGCTGTTTGAGCGgtaaacatat ... tcttgagcagGTTAGTTGGAAAGACTACCCAATTGGAAGGTGAGAAAATGCAGAAAGAGGC
gcagttggtttatttatttcttttttaaaactaaagatgcatttgtcttgagcagGTTAGTTGGAAAGACTACCCAATTGGAAGGTGAGAAAATGCAGAAAGAGGCTGAAGTACAGAAACTTATGGAAGAGAATGTGAGGTTGAGTGCTCTGCTT
aactaaa putative branch site (score: 2)
tttgtctt putative PPT
tttatttatttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acattttcttgcctatggggtttaatatttaattttaattctcatgcagttggtttatttatttcttttttaaaactaaagatgcatttgtcttgagcagGTTAGTTGGAAAGACTACCCAATTGGAAGGTGAGAAAATGCAGAAAGAGGCTGAAGTACAGAAACTTATGGAAGAGAATGTGAGGTTGAGTGCTCTGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - -ttcttgc
- - - - - - - - ggggttt
- - - - - - - - - - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattt