Sequence
atgc intronic sequence ATGC exonic sequence...tctatatttcaaagatattaaaggtgttaatttcatatgggtaggtattgtttgaatgctaagagtaaagggctttttgctgcttctttttttatggcagGTGGTGAATGAAATATTTGAAGGGAAGAAGAACGAGAATGCTGAATGTGAGAAGAGTGTGATAACCAGGTCCTTGCTGTTGGACTTCTCGGACAAATCCG
Basic information
species | Glycine max |
transcript | GLYMA16G23900.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151394922|gb|EV264793.1|EV264793EST: CTTTGGTGTCTCCACCTTCTAGTGTGGTTGAAGAACAATTGATCTCTCGG GTGGTGAATGAAATATTTGAAGGGAAGAAGAACGAGAATGCTGAATGTGAG
genomic: CTTTGGTGTCTCCACCTTCTAGTGTGGTTGAAGAACAATTGATCTCTCGGgttagtaatc ... tttatggcagGTGGTGAATGAAATATTTGAAGGGAAGAAGAACGAGAATGCTGAATGTGAG
EST:
gi|192324334|gb|FK018310.1|FK018310EST: CTTTGGTGTCTCCACCTTCTAGTGTGGTTGAAGAACAATTGGTCTCTCGG GTGGTGAATGAAATATTTGAAGGGAAGAAGAACGAGAGTGCTGAATGTGAG
genomic: CTTTGGTGTCTCCACCTTCTAGTGTGGTTGAAGAACAATTGATCTCTCGGgttagtaatc ... tttatggcagGTGGTGAATGAAATATTTGAAGGGAAGAAGAACGAGAATGCTGAATGTGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattgtttgaatgctaagagtaaagggctttttgctgcttctttttttatggcagGTGGTGAATGAAATATTTGAAGGGAAGAAGAACGAGAATGCTGAATGTGAGAAGAGTGTGATAACCAGGTCCTTGCTGTTGGACTTCTCGGACAAATCCG
ctttttgctgcttctt CT-rich tract
ttctttttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctatatttcaaagatattaaaggtgttaatttcatatgggtaggtattgtttgaatgctaagagtaaagggctttttgctgcttctttttttatggcagGTGGTGAATGAAATATTTGAAGGGAAGAAGAACGAGAATGCTGAATGTGAGAAGAGTGTGATAACCAGGTCCTTGCTGTTGGACTTCTCGGACAAATCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - ggtgtta
- - - - - - - - - - - - - - - - - - - gggtagg
- - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgct