Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaaaatttctttatcttttgaaaagttttcaaggatgcatttcaaagatttatgtggacttttttttcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTCATACTCATTTTGCGAAACCGGCTGAAGTATGCTCTAACATACCGTGAAG

Basic information

species Glycine max
transcript GLYMA16G23730.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23730.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0058g00390.t01 (Vitis vinifera), 3'ss of exon 3
----gtaagtgaaaatttctttatctt-----ttgaaaagttttca-aggatgcatttcaaagattta--tgtggacttttttttctt--------------gtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTCATACTCATTTTGCGAAACCGGCTGAAGTATGCTCTAACATACCGTGAAG
    || | |||||| |  |  | | |      |||   ||||||  | | ||  || |    || ||  ||| |  ||||| || ||              ||  |||| || ||||| || ||||||||||| ||||| ||||||||| ||||  | || ||||||||||||||| ||||||||||||| || |||||||||||||
gtaagtcaatgaaaaataataaaccatgaagcctgattggttttcctatgctgttttcctgttatctagttgtagtgtttttatttttctattattttttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTGATCCTCATTTTGCGAAACAGGCTGAAGTATGCACTCACATACCGTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209725149|gb|BW663076.1|BW663076
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|16348394|gb|BI973989.1|BI973989
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|17154047|gb|BM143980.1|BM143980
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|18039002|gb|BM307296.1|BM307296
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298180253|gb|HO025468.1|HO025468
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298176453|gb|HO026688.1|HO026688
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCACCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|6666961|gb|AW278420.1|AW278420
EST:     CCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: CCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|14991140|gb|BI316813.1|BI316813
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|4313657|gb|AI460776.1|AI460776
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298190839|gb|HO032960.1|HO032960
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCGTCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|10847497|gb|BF070175.1|BF070175
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298191204|gb|HO038683.1|HO038683
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|192331864|gb|FK026648.1|FK026648
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCAAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|209706132|gb|BW653424.1|BW653424
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298194785|gb|HO043257.1|HO043257
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|213606544|gb|DB972493.1|DB972493
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|21677168|gb|BQ629519.1|BQ629519
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|213619445|gb|DB963411.1|DB963411
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|193696755|gb|FK638401.1|FK638401
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|208299345|gb|GE100552.1|GE100552
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAA
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAA
EST: gi|7684838|gb|AW755486.1|AW755486
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298178682|gb|HO024417.1|HO024417
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGATGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|192297728|gb|FG989963.1|FG989963
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|16346110|gb|BI971705.1|BI971705
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACTTTTTGTTTGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|7145675|gb|AW507597.1|AW507597
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|207757066|gb|GD728120.1|GD728120
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298163757|gb|HO012490.1|HO012490
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|5687916|gb|AI940931.1|AI940931
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|46492670|gb|CN472226.1|CN472226
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|12772845|gb|BG237772.1|BG237772
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|16347050|gb|BI972645.1|BI972645
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|6134564|gb|AW132957.1|AW132957
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298176076|gb|HO015481.1|HO015481
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298194198|gb|HO040846.1|HO040846
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|11275151|gb|BF325474.1|BF325474
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298180780|gb|HO022219.1|HO022219
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|18040225|gb|BM308519.1|BM308519
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|209706237|gb|BW656742.1|BW656742
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298197686|gb|HO045165.1|HO045165
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|21678409|gb|BQ630760.1|BQ630760
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298192769|gb|HO033203.1|HO033203
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298186856|gb|HO033955.1|HO033955
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|209723174|gb|BW675120.1|BW675120
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|8670337|gb|BE191444.1|BE191444
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|151397451|gb|EV267324.1|EV267324
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298188698|gb|HO035391.1|HO035391
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|207803385|gb|GD775802.1|GD775802
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|19453490|gb|BM954900.1|BM954900
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|23727040|gb|BU761534.1|BU761534
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|6914313|gb|AW395843.1|AW395843
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|7145645|gb|AW507567.1|AW507567
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298178660|gb|HO024395.1|HO024395
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|13787383|gb|BG649975.1|BG649975
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|13481889|gb|BG511232.1|BG511232
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|16347648|gb|BI973243.1|BI973243
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|10846181|gb|BF069142.1|BF069142
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298169099|gb|HO020459.1|HO020459
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAACCGAGGGAATGCCTGCTACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298180270|gb|HO025485.1|HO025485
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298176172|gb|HO015577.1|HO015577
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|209729579|gb|BW655155.1|BW655155
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|21888969|gb|BQ742182.1|BQ742182
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|23733640|gb|BU765027.1|BU765027
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|8282756|gb|BE020317.1|BE020317
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298195263|gb|HO043791.1|HO043791
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|298197240|gb|HO041983.1|HO041983
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCCAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|19453552|gb|BM954962.1|BM954962
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|207832084|gb|GD805134.1|GD805134
EST:     GGCTTAATGCCCCAAAGCATTAGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|7234791|gb|AW570124.1|AW570124
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
EST: gi|208289305|gb|GE085780.1|GE085780
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagttttcaaggatgcatttcaaagatttatgtggacttttttttcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTCATACTCATTTTGCGAAACCGGCTGAAGTATGCTCTAACATACCGTGAAG
                                     cttttttttcttgttt  CT-rich tract
                                      ttttttttcttgttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgaaaatttctttatcttttgaaaagttttcaaggatgcatttcaaagatttatgtggacttttttttcttgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTGCCACTCATACTCATTTTGCGAAACCGGCTGAAGTATGCTCTAACATACCGTGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG