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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggatgctcattcgttttccctctattttcctttcctttcttttactttaccccccatagagcgtaaagtagattgctgataaaatttgtgtttttgagctaaaattagtgttattattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTGTTGACAAGAATGGCAAACCTCATAAACTGAGATTGTATTCTATTGCTAG

Basic information

species Glycine max
transcript GLYMA16G23710.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23710.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0023g03510.t01 (Vitis vinifera), 3'ss of exon 2
----------gttggatgctc-attcgttttccctctattttc--ctttcctttcttttactttaccccccatagagcgtaaagtagattgctgataaaatttg--tgtttttgagctaaaattagt--gttatt---attgc--agGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTGTTGACAAGAATGGCAAACCTCATAAACTGAGATTGTATTCTATTGCTAG
           ||  |||||| ||   | |    |  |  |||  |    |  ||||| | ||||        |     | |  |   | ||||||      ||  |  ||||||||| || ||  |  || | |    ||||  ||||||  |||| ||||||||||| ||||| |||||||||||| | |||||||||||||||||||| || ||||| || ||||||||||| || ||||| ||
gtaacgaccttttacatgctccatgtatatatattggaaattcaacagaaccatctttaattttat---gtggaacttttgagttttttagctgatcgctcctgatttcttttgagctgaatttgattggtcaattgggttgctcagGAGAAGTTCCCTACAGAGAAGGGCAATCCATTGGGGTAATTGCAGATGGTGTTGACAAGAATGGGAAGCCTCACAAGCTGAGATTGTACTCAATTGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213595158|gb|DB972092.1|DB972092
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
EST: gi|11688404|gb|BF596080.1|BF596080
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
EST: gi|213610723|gb|DB961198.1|DB961198
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
EST: gi|193413014|gb|FK381703.1|FK381703
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTAACAAGAGAAGGAC
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttggatgct ... attattgcagGAGAGATTCCTTA-CA-GAGAAGGAC
EST: gi|120532662|gb|EH260795.1|EH260795
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
EST: gi|120529657|gb|EH257791.1|EH257791
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
EST: gi|213611575|gb|DB960855.1|DB960855
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
EST: gi|213600291|gb|DB955873.1|DB955873
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
EST: gi|105634481|gb|DW247568.1|DW247568
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
EST: gi|209707438|gb|BW670951.1|BW670951
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
EST: gi|213592264|gb|DB965999.1|DB965999
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
EST: gi|213597976|gb|DB972164.1|DB972164
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
EST: gi|6667179|gb|AW278638.1|AW278638
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
EST: gi|192296690|gb|FG991258.1|FG991258
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
EST: gi|13480735|gb|BG510078.1|BG510078
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
EST: gi|209718136|gb|BW657795.1|BW657795
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagattgctgataaaatttgtgtttttgagctaaaattagtgttattattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGTGTTGACAAGAATGGCAAACCTCATAAACTGAGATTGTATTCTATTGCTAG
                             agctaaa  putative branch site (score: 3)
                                taaaattagtgttatt  TA-rich tract