1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaaacttatattatatcactaacttatgttgttgttgttgaataaaaacctagaacttatatcactagcgatactgaacaaaaaacacttgttttaacagAGGTGTGGGAGACTTGATGACCAAATTGCTCTATTGAAGCACAAGTTGTATTTGATTCAACAAGGTTTGGCTTTCAATGGCAAGAGAACAAAGACTGCCA
species | Glycine max |
transcript | GLYMA16G23380.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGATCAAGCCCAGGAATCTCTCGATAATATCCTCTTGGATCTCTACAAG AGGTGTGGGAGACTTGATGACCAAATTGCTCTATTGAAGCACAAGTTGTATEST: gi|193340623|gb|FK307082.1|FK307082
genomic: CAGATCAAGCCCAGGAATCTCTCGATAATATCCTCTTGGATCTCTACAAGgtaggtcact ... gttttaacagAGGTGTGGGAGACTTGATGACCAAATTGCTCTATTGAAGCACAAGTTGTAT
EST: CAGATCAAGCCCAGGAATCTCTCGATAATATCCTCTTGGATCTCTACAAG GEST: gi|193340623|gb|FK307082.1|FK307082
genomic: CAGATCAAGCCCAGGAATCTCTCGATAATATCCTCTTGGATCTCTACAAGgtaggtcact ... gttttaacag-
EST: CAGATCAAGCCCAGGAATCTCTCGATAATATCCTCTTGGATCTCTACAAG G
genomic: CAGATCAAGCCCAGGAATCTCTCGATAATATCCTCTTGGATCTCTACAAGgtaggtcact ... gttttaacag-
aaacctagaacttatatcactagcgatactgaacaaaaaacacttgttttaacagAGGTGTGGGAGACTTGATGACCAAATTGCTCTATTGAAGCACAAGTTGTATTTGATTCAACAAGGTTTGGCTTTCAATGGCAAGAGAACAAAGACTGCCA
cttgtttt CT-rich tract
aacttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaacttatattatatcactaacttatgttgttgttgttgaataaaaacctagaacttatatcactagcgatactgaacaaaaaacacttgttttaacagAGGTGTGGGAGACTTGATGACCAAATTGCTCTATTGAAGCACAAGTTGTATTTGATTCAACAAGGTTTGGCTTTCAATGGCAAGAGAACAAAGACTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - cactaac
- - - - - - - - - - - - - tgttgtt
- - - - - - - - - - - - - -gttgttg
- - - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa