Sequence
atgc intronic sequence ATGC exonic sequencegtactactattattttttctttgtcaattttgggatgttgagttctttttagatttttattattttattacgtggaatagGTCAAGAGGATTATAATAGATTACGACCTTTGAGTTATCGTGGTGCCGATGTTTTCATATTAGCTTTCTCTCTGATTAGCAAGGCCAGTTATGAAAATGT
Basic information
species | Glycine max |
transcript | GLYMA16G23340.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G23340.1 (Glycine max), 3'ss of exon 2
lower sequence: AT4G35950.1 (Arabidopsis thaliana), 3'ss of exon 2
gtactactattattttttctttgtcaattttgggatgttgagttcttttta-------gatttttattattttattacgtggaatagGTCAAGAGGATTATAATAGATTACGACCTTTGAGTTATCGTGGTGCCGATGTTTTCATATTAGCTTTCTCTCTGATTAGCAAGGCCAGTTATGAAAATGT
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gtaatga-atgatgatccaattcataatccttggtgagagagctttccttgatgaatcggtcgaaattatgtttttggtttatgcagGGCAAGAGGACTATAACAGATTAAGACCTTTGAGTTACCGTGGTGCTGATGTTTTCATTCTTGCCTTCTCTCTCATTAGTAAGGCTAGTTATGAGAATGT
upper sequence: GLYMA16G23340.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G17800.2 (Arabidopsis thaliana), 3'ss of exon 3
--------------gtactactattattttttctttgt--caattttgggatgttgagttctttttagatttttattattttattacgtggaatagGTCAAGAGGATTATAATAGATTACGACCTTTGAGTTATCGTGGTGCCGATGTTTTCATATTAGCTTTCTCTCTGATTAGCAAGGCCAGTTATGAAAATGT
|| | ||| || | | | || | |||||| | | || | | | |||| || | || || || ||| || ||||||||||| |||||| ||||||||||||| || ||||| ||||||||||| ||||| |||||||| || || ||||| |||||||| |||||
gtactgactaaataatagggatcttacttagtagtagcggcagctatgggatttggggtc----tgaaacttttgttttgttgttgta---aacagGGCAGGAGGATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGTTTTCATCTTAGCATTCTCTCTTATCAGTAAGGCTAGTTATGAGAATGT
upper sequence: GLYMA16G23340.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0023g03860.t01 (Vitis vinifera), 3'ss of exon 3
------------gtactactattattttttctttgtcaattttgg--gatgttgagttctttttagatttttattattttattacgtggaatagGTCAAGAGGATTATAATAGATTACGACCTTTGAGTTATCGTGGTGCCGATGTTTTCATATTAGCTTTCTCTCTGATTAGCAAGGCCAGTTATGAAAATGT
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gtagcttcacagtcacttgtttccttttttgttttcaattactaacaaacattttgattattttatggctctgaatttgttctctttggaacagGGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGCGGGGCAGATGTTTTCATATTGGCATTCTCTCTCATCAGCAAGGCCAGCTATGAAAATGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192330642|gb|FK021961.1|FK021961EST: TGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCG GTCAAGAGGATTATAATAGATTACGACCTTTGAGTTATCGTGGTGCCGATG
genomic: TGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCGgtactactat ... cgtggaatagGTCAAGAGGATTATAATAGATTACGACCTTTGAGTTATCGTGGTGCCGATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattttgggatgttgagttctttttagatttttattattttattacgtggaatagGTCAAGAGGATTATAATAGATTACGACCTTTGAGTTATCGTGGTGCCGATGTTTTCATATTAGCTTTCTCTCTGATTAGCAAGGCCAGTTATGAAAATGT
atgttgagttcttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtactactattattttttctttgtcaattttgggatgttgagttctttttagatttttattattttattacgtggaatagGTCAAGAGGATTATAATAGATTACGACCTTTGAGTTATCGTGGTGCCGATGTTTTCATATTAGCTTTCTCTCTGATTAGCAAGGCCAGTTATGAAAATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG