1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atagcattatttttccatttggattcaactgaatgcttgttgttgctgacaatactttgtgcaaatttctctagataatattttctttacaattttacagGAGTTTCTTTTCTTCAAATATGGATGAGAACATGAAACAGTTCCAAAAGAAATTAACAGAACTGGAAGTGGAAGCTGAGCATATTCTTTTAGCCCGACAT
species | Glycine max |
transcript | GLYMA16G19450.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGATCTTGGC-TTACAAACTCGCTTTAGCATAAGCAGAAATCAACGAATT GAGTTTCTTTTCTTCAAATATGGATGAGAACATGAAACAGTTCCAAAAGAAEST: gi|4260421|gb|AI416917.1|AI416917
genomic: TGATCTTGGCTTTACAAACTCGCTTTAGCATAAGCAGAAATCAACGAATTgtaagtaaca ... aattttacagGAGTTTCTTTTCTTCAAATATGGATGAGAACATGAAACAGTTCCAAAAGAA
EST: TGATCTTGGCTTTACAAACTCGCTNTAGCATAAGCAGAAATCAACGAATT GAGTTTCTTTTCTTCAAATATGGATGAGAACATGAAACAGEST: gi|192297436|gb|FG989500.1|FG989500
genomic: TGATCTTGGCTTTACAAACTCGCTTTAGCATAAGCAGAAATCAACGAATTgtaagtaaca ... aattttacagGAGTTTCTTTTCTTCAAATATGGATGAGAACATGAAACAG
EST: TGATCTTGGCTTTACAAACTCGCTTTAGCATAAGCAGAAATCAACGAATT GAGTTTCTTTTCTTCAAATATGGATGAGAACATGAAACAGTTCCAAAAGAA
genomic: TGATCTTGGCTTTACAAACTCGCTTTAGCATAAGCAGAAATCAACGAATTgtaagtaaca ... aattttacagGAGTTTCTTTTCTTCAAATATGGATGAGAACATGAAACAGTTCCAAAAGAA
ctgacaatactttgtgcaaatttctctagataatattttctttacaattttacagGAGTTTCTTTTCTTCAAATATGGATGAGAACATGAAACAGTTCCAAAAGAAATTAACAGAACTGGAAGTGGAAGCTGAGCATATTCTTTTAGCCCGACAT
tgctgac putative branch site (score: 2)
aaatttctctagataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagcattatttttccatttggattcaactgaatgcttgttgttgctgacaatactttgtgcaaatttctctagataatattttctttacaattttacagGAGTTTCTTTTCTTCAAATATGGATGAGAACATGAAACAGTTCCAAAAGAAATTAACAGAACTGGAAGTGGAAGCTGAGCATATTCTTTTAGCCCGACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - ccatttg
- - - - - - - - - - - - - - - gaatgct
- - - - - - - - - - - - - - - - - - - - - -tgctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtgc