Sequence
atgc intronic sequence ATGC exonic sequence...ttataatacttgcttgttgctataaacctctagtatgatgtcaatatttggtctgaaaagatggtattttactcaagctagtatgttacttgttatgtagGATAAATTTGAACAGAGGAAGACTGAGTTATCTTCTAAGAGTTCAAAATTTACTTCTGGTGAAGGTGGAACTGATAGTCAAGCTGATAGTCAACCATCTA
Basic information
species | Glycine max |
transcript | GLYMA16G19420.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|12497319|gb|BG047507.1|BG047507EST: GAAGAAAAAAGGATCAAAGTTGGGTGGGTCCTCGTGCAGAATCTTCATAT GATAAATTTGAACAGAGGAAGACTGAGTTATCTTCTAAGAGTTCAAAATTT
genomic: GAAGAAAAAAGGATCAAAGTTGGGTGGGTCCTCGTGCAGAATCTTCATATgtaagtttta ... tgttatgtagGATAAATTTGAACAGAGGAAGACTGAGTTATCTTCTAAGAGTTCAAAATTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttggtctgaaaagatggtattttactcaagctagtatgttacttgttatgtagGATAAATTTGAACAGAGGAAGACTGAGTTATCTTCTAAGAGTTCAAAATTTACTTCTGGTGAAGGTGGAACTGATAGTCAAGCTGATAGTCAACCATCTA
tattttact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttataatacttgcttgttgctataaacctctagtatgatgtcaatatttggtctgaaaagatggtattttactcaagctagtatgttacttgttatgtagGATAAATTTGAACAGAGGAAGACTGAGTTATCTTCTAAGAGTTCAAAATTTACTTCTGGTGAAGGTGGAACTGATAGTCAAGCTGATAGTCAACCATCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - tacttgc
- - - - - - - tgttgct
- - - - - - - - - - - - - - - - - -tgatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - gtctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatggta