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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatttttgctgttgctcattctccttttttcccccattgtcctcaaaccagTGCTCAGCATTCTCTGCTAGTCCTTCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGTTTGTTGCACTTGCTACTATTGTTGGATCT

Basic information

species Glycine max
transcript GLYMA16G19230.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19230.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 3'ss of exon 3
-----------------------------------------------gtaatatttttgctgttgct--------cattctccttttttcccccattgtcc-tcaaaccagTGCTCAGCATTCTCTGCTAGTCCTTCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGTTTGTTGCACTTGCTACTATTGTTGGATCT-
                                               |    |||| ||| || |          ||||   | | || |   |  || |  ||||  ||||||||||||||  | |||| |||  |||| |||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||| || |||||||| ||  
gtatgtttgcctcttgaatgtagcattagcattagtttttatatcatgagtcatttatgccgtagagagtttcagcatttaacatattcctgtctctggctatcaatgcagTGCTCAGCATTTACAGCTAATCCCACATCTGAGAAAACATGGACTATGCGTACTACTTTTCCAGAATATGTT-GTTGCTCTTGCGACAATTGTTGGGTCAG

upper sequence: GLYMA16G19230.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 3'ss of exon 3
------------------------------------------------------------gtaatatttttgctgttgctcattctccttttttcccccattgtcctcaaac--cagTGCTCAGCATTCTCTGCTAGTCCTTCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGTTTGTTGCACTTGCTACTATTGTTGGATCT-
                                                              ||||| |||     ||   | | || | | ||| ||        |  | |  |||||||||||||   | |||| | || | || || || |||||| ||||||||||||| ||||||||||||||| ||||| |||||||| || ||||| ||  
gtaatactttaaattttcttgcattcttgttatgagtttttctttcgttagtctctatgcaaaatatatttcagtatgtaaaatatcttctcttctccttggtatattgatcggcagTGCTCAGCATATACAGCTAATGCTGCGTCTGAAAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTT-GTTGCTCTTGCTACAATCGTTGGGTCAG

upper sequence: GLYMA16G19230.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 3'ss of exon 3
---------------------------------------------------------------------------------------------------gtaatatttttgct-gttgctcat-----tctccttttttcccccattgtcctcaaac----cagTGCTCAGCATTCTCTGCTAGTCCTTCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGTTTGTTGCACTTGCTACTATTGTTGGATCT-
                                                                                                   |  ||||||||| |  |  |  ||     | ||||| |      | || || ||        |||||||| ||||  ||||| ||| ||||||| |||||||||||||| ||||| ||||| ||||||||||||||| ||||| |||||||| ||||| |||||| 
gttctatttccattcatttgattatctctgaagttccattgttgcaggagataatactttctgtacctcgttcttatttcccttttgagattatctcttgctatatttttggtcatcacaaatataaatatccttatcctgtgccttttcttctcttttttcagTGCTCTGCATATTCTGCAAGTGCTTCATCTGAGAAAACATGGACTATGCGCACTACTTTTCCAGAATATGTT-GTTGCTCTTGCTACCATTGTCGGATCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatatttttgctgttgctcattctccttttttcccccattgtcctcaaaccagTGCTCAGCATTCTCTGCTAGTCCTTCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGTTTGTTGCACTTGCTACTATTGTTGGATCT
            ctgttgctcattctcc  CT-rich tract
     attttt  TA-rich tract