1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtagtaccatgactctgatgcactaactcagtaattgtttgttctgtgtgttgttgctttttaacttgcactcgtgtttagTGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGATGCGGAAGAGGTGCGCCCTCCCTTGCCTGTAATAAGGGAAACTCTCTAC
species | Glycine max |
transcript | GLYMA16G18450.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAG TGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGAEST: gi|120496126|gb|EH224293.1|EH224293
genomic: ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAGgtagtaccat ... tcgtgtttagTGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
EST: ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAG TGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGAEST: gi|208112351|gb|GD913708.1|GD913708
genomic: ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAGgtagtaccat ... tcgtgtttagTGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
EST: ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAG TGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGAEST: gi|16104800|gb|BI892540.1|BI892540
genomic: ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAGgtagtaccat ... tcgtgtttagTGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
EST: ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAG TGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGAEST: gi|120495145|gb|EH223312.1|EH223312
genomic: ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAGgtagtaccat ... tcgtgtttagTGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
EST: ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAG TGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGAEST: gi|208075195|gb|GD877666.1|GD877666
genomic: ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAGgtagtaccat ... tcgtgtttagTGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
EST: CTCCGCCTTTGGAAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAG TGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGAEST: gi|298195719|gb|HO044110.1|HO044110
genomic: CTCCGCCTTTGG-AAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAGgtagtaccat ... tcgtgtttagTGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
EST: ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAG TGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
genomic: ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAGgtagtaccat ... tcgtgtttagTGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
ctcagtaattgtttgttctgtgtgttgttgctttttaacttgcactcgtgtttagTGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGATGCGGAAGAGGTGCGCCCTCCCTTGCCTGTAATAAGGGAAACTCTCTAC
ttttaac putative branch site (score: 2)
tttttaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtaccatgactctgatgcactaactcagtaattgtttgttctgtgtgttgttgctttttaacttgcactcgtgtttagTGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGATGCGGAAGAGGTGCGCCCTCCCTTGCCTGTAATAAGGGAAACTCTCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG