Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggataattttattctcatatgcaactatgagttgccattgttgttggatgccaatagttcttttttatgggttttgattgtttgttaatgacttgtgattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTCTTCAACTTGCAGCTCAGAGTGGAAAGAGTTCTGCTCCAAACATGCGGGA

Basic information

species Glycine max
transcript GLYMA16G18440.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298165973|gb|HO008944.1|HO008944
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|20813057|gb|BQ297535.1|BQ297535
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|7640437|gb|AW734739.1|AW734739
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|21887733|gb|BQ740946.1|BQ740946
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|192327498|gb|FK019625.1|FK019625
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|298186415|gb|HO037048.1|HO037048
EST:     CGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTT
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|207753581|gb|GD725993.1|GD725993
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|192296023|gb|FG989417.1|FG989417
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|298182343|gb|HO026518.1|HO026518
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|8282692|gb|BE020253.1|BE020253
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|298195637|gb|HO044028.1|HO044028
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGATGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|12496615|gb|BG047153.1|BG047153
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|192326148|gb|FK016265.1|FK016265
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|23730618|gb|BU763398.1|BU763398
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|298199056|gb|HO042419.1|HO042419
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTCCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|192322959|gb|FK016690.1|FK016690
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|298166418|gb|HO010997.1|HO010997
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|192310120|gb|FK002560.1|FK002560
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|213605604|gb|DB970719.1|DB970719
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|192323212|gb|FK016343.1|FK016343
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|298197136|gb|HO041879.1|HO041879
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC
EST: gi|192329317|gb|FK020236.1|FK020236
EST:     TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTA                         ATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGGAGGGTC
genomic: TGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAgtatggataa ... gattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatagttcttttttatgggttttgattgtttgttaatgacttgtgattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTCTTCAACTTGCAGCTCAGAGTGGAAAGAGTTCTGCTCCAAACATGCGGGA
                               tgttaat  putative branch site (score: 3)
      ttcttttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggataattttattctcatatgcaactatgagttgccattgttgttggatgccaatagttcttttttatgggttttgattgtttgttaatgacttgtgattgtgaagATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTCTTCAACTTGCAGCTCAGAGTGGAAAGAGTTCTGCTCCAAACATGCGGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA