1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatgtgatatgttcactttagattgtttaggatggatgtatatgaaattggtttcttcttatcaaattggattttgatctgcttttgttggtctgcatagGGCTTTTTGCACATTGATGAATACCCTCCAGATGCTAATCAAGGATTTGACATTCCATCAGCAATAATAAGCTTTCCTGACTTCCATGCTGGTTTGCAAT
species | Glycine max |
transcript | GLYMA16G18380.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATTTCCTTGTGAAATGAAGTCAGCTGTATTGAGTATAGAGTTTGATAAG GGCTTTTTGCACATTGATGAATACCCTCCAGATGCTAATCAAGGATTTGACEST: gi|10233363|gb|BE802251.1|BE802251
genomic: AATTTCCTTGTGAAATGAAGTCAGCTGTATTGAGTATAGAGTTTGATAAGgtctgctcca ... gtctgcatagGGCTTTTTGCACATTGATGAATACCCTCCAGATGCTAATCAAGGATTTGAC
EST: AATTTCCTTGTGAAATGAAGTCAGCTGTATTGAGTATAGAGTTTGATAAG GGCTTTTTGCACATTGATGAATACCCTCCAGATGCTAATCAAGGATTTGACEST: gi|7234325|gb|AW569664.1|AW569664
genomic: AATTTCCTTGTGAAATGAAGTCAGCTGTATTGAGTATAGAGTTTGATAAGgtctgctcca ... gtctgcatagGGCTTTTTGCACATTGATGAATACCCTCCAGATGCTAATCAAGGATTTGAC
EST: AATTTCCTTGTGAAATGAAGTCAGCTGTATTGAGTATAGAGTTTGATAAG GGCTTTTTGCACATTGATGAATACCCTCCAGATGCTAATCAAGGATTTGAC
genomic: AATTTCCTTGTGAAATGAAGTCAGCTGTATTGAGTATAGAGTTTGATAAGgtctgctcca ... gtctgcatagGGCTTTTTGCACATTGATGAATACCCTCCAGATGCTAATCAAGGATTTGAC
aattggtttcttcttatcaaattggattttgatctgcttttgttggtctgcatagGGCTTTTTGCACATTGATGAATACCCTCCAGATGCTAATCAAGGATTTGACATTCCATCAGCAATAATAAGCTTTCCTGACTTCCATGCTGGTTTGCAAT
ttttgat putative branch site (score: 4)
ttatcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtgatatgttcactttagattgtttaggatggatgtatatgaaattggtttcttcttatcaaattggattttgatctgcttttgttggtctgcatagGGCTTTTTGCACATTGATGAATACCCTCCAGATGCTAATCAAGGATTTGACATTCCATCAGCAATAATAAGCTTTCCTGACTTCCATGCTGGTTTGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - tgatatg
- - - - - - - - - - - - - - -ggatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttttg