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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atagtagatacaaagatcatgtgctgttagaatttaggactccaaatcttaaattcatgcaaattagatatgacttattttaatccagaaattattgcagGGGTTAGCTGGATTGGAAATTTACCTTGTATCTCTGACTTGCAAAGAGAAGCCAATGGAAAATTGTTTGAATTTAGGCAAAAGCATTTATCAATAAAGGG

Basic information

species Glycine max
transcript GLYMA16G17640.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6481516|gb|AW200787.1|AW200787
EST:     TGTTGGAGTTGGCCTACCTGCTAATTTTATCTTTGAAGGTCCATATAATG                         GGGTTAGCTGGATTGGAAATTTACCTTGTATCTCTGACTTGCAAAGAGAAG
genomic: TGTTGGAGTTGGCCTACCTGCTAATTTTATCTTTGAAGGTCCATATAATGgtaaatggca ... attattgcagGGGTTAGCTGGATTGGAAATTTACCTTGTATCTCTGACTTGCAAAGAGAAG
EST: gi|151398487|gb|EV268358.1|EV268358
EST:     TGTTGGAGTTGGCCTACCTGCTAGTTTTATCTTTGAAGGTCCATATAATG                         GGGTTAGCTGGATTGGAAATTTACCTTGTATCTCTGACTTGCAAAGAGAAG
genomic: TGTTGGAGTTGGCCTACCTGCTAATTTTATCTTTGAAGGTCCATATAATGgtaaatggca ... attattgcagGGGTTAGCTGGATTGGAAATTTACCTTGTATCTCTGACTTGCAAAGAGAAG
EST: gi|6481677|gb|AW200948.1|AW200948
EST:     TGTTGGAGTTGGCCTACCTGCTAATTTTATCTTTGAAGGTCCATATAATG                         GGGTTAGCTGGATTGGAAATTTACCTTGTATCTCTGACTTTGCAA-GAGAA
genomic: TGTTGGAGTTGGCCTACCTGCTAATTTTATCTTTGAAGGTCCATATAATGgtaaatggca ... attattgcagGGGTTAGCTGGATTGGAAATTTACCTTGTATCTCTGACTT-GCAAAGAGAA
EST: gi|298163703|gb|HO012436.1|HO012436
EST:     TGTTGGAGTTGGCCTACCTGCTAATTTTATCTTTGAAGGTCCATATAATG                         GGGTTAGCTGGATTGGAAATTTACCTTGTATCTCTGACTTGCAAAGAGAAG
genomic: TGTTGGAGTTGGCCTACCTGCTAATTTTATCTTTGAAGGTCCATATAATGgtaaatggca ... attattgcagGGGTTAGCTGGATTGGAAATTTACCTTGTATCTCTGACTTGCAAAGAGAAG
EST: gi|298190599|gb|HO032720.1|HO032720
EST:     TGTTGGAGTTGGCCTACCTGCTAATTTTATCTTTGAAGGTCCATATAATG                         GGGTTAGCTGGATTGGAAATTTACCTTGTATCTCTGACTTGCAAAGAGAAG
genomic: TGTTGGAGTTGGCCTACCTGCTAATTTTATCTTTGAAGGTCCATATAATGgtaaatggca ... attattgcagGGGTTAGCTGGATTGGAAATTTACCTTGTATCTCTGACTTGCAAAGAGAAG
EST: gi|31473717|gb|CD415745.1|CD415745
EST:     GTTGGAGATTGGCCTACCTGCTAATTTTATCTTTGAAGGTCCATATAATG                         GGGTTAGCTGGATTGGAAATTTACCTTGTATCTCTGACTTGCAAAGAGAAG
genomic: GTTGGAG-TTGGCCTACCTGCTAATTTTATCTTTGAAGGTCCATATAATGgtaaatggca ... attattgcagGGGTTAGCTGGATTGGAAATTTACCTTGTATCTCTGACTTGCAAAGAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttaaattcatgcaaattagatatgacttattttaatccagaaattattgcagGGGTTAGCTGGATTGGAAATTTACCTTGTATCTCTGACTTGCAAAGAGAAGCCAATGGAAAATTGTTTGAATTTAGGCAAAAGCATTTATCAATAAAGGG
                                ttttaat  putative branch site (score: 3)
               aaattagatatgactt  TA-rich tract