1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgatatgtttcctatgtatttagaaagaagacaactcttgattcatttttcacaagactatattgtattcaagattaacctgtataatttgtttgaacagCAAAGAGATTCTTCTTACTCAAGATTGACATCTGCAAGGGAAAGCCCCATGGCCTCAAACAAGGATTGGACGCCGAGGAGTCACTATAAGCCCTCTGGGA
species | Glycine max |
transcript | GLYMA16G17590.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCATCAGTTTGTGATGTAGTCTTAGAGGATGAGGATGAGCCTAAGGAGTGGATGGCACAGGTGGAGCCAGGGGTTCACATTACCTTTGTGTCTCTTCCTAACGGAGGAAATGATC
genomic: ATCATCAGTTTGTGATGTAGTCTTAGAGGATGAGGATGAGCCTAAGGAGTGGATGGCACAGGTGGAGCCAGGGGTTCACATTACCTTTGTGTCTCTTCCTAACGGAGGAAATGATC
tttttcacaagactatattgtattcaagattaacctgtataatttgtttgaacagCAAAGAGATTCTTCTTACTCAAGATTGACATCTGCAAGGGAAAGCCCCATGGCCTCAAACAAGGATTGGACGCCGAGGAGTCACTATAAGCCCTCTGGGA
gattaac putative branch site (score: 2)
tttgttt putative PPT
tataatttgtttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatatgtttcctatgtatttagaaagaagacaactcttgattcatttttcacaagactatattgtattcaagattaacctgtataatttgtttgaacagCAAAGAGATTCTTCTTACTCAAGATTGACATCTGCAAGGGAAAGCCCCATGGCCTCAAACAAGGATTGGACGCCGAGGAGTCACTATAAGCCCTCTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - -tgtttcc
- - - - - - - - - - -agaaagaa
- - - - - - - - - - - - - - - -caactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acctgta