1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttttgttgttgttgttatagtaccatggatttgaccttgttgtcttgatgaagtttacttttgtaaaaatatttatgattttgacattatgataatgcagCCAGATAAAGGTGCAGCTGTTCCAAAGTTTGGTGACTGGGATGTGAATAACCCTGCATCAGCAGATGGCTTTACTCACATTTTCAACAAAGTGAGGGAGG
species | Glycine max |
transcript | GLYMA16G12160.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAACACCAGGAAGGTCTCGGTTAAGACCGGCTAATCGAGGAGATGAAACA CCAGATAAAGGTGCAGCTGTTCCAAAGTTTGGTGACTGGGATGTGAATAACEST: gi|192331120|gb|FK020340.1|FK020340
genomic: GAACACCAGGAAGGTCTCGGTTAAGACCGGCTAATCGAGGAGATGAAACAgttagttttt ... gataatgcagCCAGATAAAGGTGCAGCTGTTCCAAAGTTTGGTGACTGGGATGTGAATAAC
EST: GAACACCAGGAAAGTCTCGGTTAAGACCGGCTAATCGAGGAGATGAAACA CCAGATAAAGGTGCAGCTGTTCCAAAGTTTGGTGACTGGGATGTGAATAACEST: gi|4397331|gb|AI496328.1|AI496328
genomic: GAACACCAGGAAGGTCTCGGTTAAGACCGGCTAATCGAGGAGATGAAACAgttagttttt ... gataatgcagCCAGATAAAGGTGCAGCTGTTCCAAAGTTTGGTGACTGGGATGTGAATAAC
EST: GAACACCAGGAAGGTCTCGGTTAAGACCGGCTAATCGAGGAGATGAAACA CCAGATAAAGGTGCAGCTGTTCCAAAGTTTGGTGACTGGGATGTGAATAAC
genomic: GAACACCAGGAAGGTCTCGGTTAAGACCGGCTAATCGAGGAGATGAAACAgttagttttt ... gataatgcagCCAGATAAAGGTGCAGCTGTTCCAAAGTTTGGTGACTGGGATGTGAATAAC
tgatgaagtttacttttgtaaaaatatttatgattttgacattatgataatgcagCCAGATAAAGGTGCAGCTGTTCCAAAGTTTGGTGACTGGGATGTGAATAACCCTGCATCAGCAGATGGCTTTACTCACATTTTCAACAAAGTGAGGGAGG
ttttgac putative branch site (score: 3)
ttttgtaaaaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgttgttgttgttatagtaccatggatttgaccttgttgtcttgatgaagtttacttttgtaaaaatatttatgattttgacattatgataatgcagCCAGATAAAGGTGCAGCTGTTCCAAAGTTTGGTGACTGGGATGTGAATAACCCTGCATCAGCAGATGGCTTTACTCACATTTTCAACAAAGTGAGGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - gttgttg
- - - - - - - - - - - ccatgga
- - - - - - - - - - - - - - - - - - -tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata