1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgaggttctggatatagtcacatatttcctatatttgttatgtttgaatcatagtgtttcattgatgcattggtattttttgcttctttattcatgctcagGATATTTGGCAACCATCTTTTGTTTCTGATTGGCTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCAGCCACTCCAGTCTTTACTTTTCTG
species | Glycine max |
transcript | GLYMA16G08380.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCTTAACCAAACGCCTTCTGTTGTCATTCTTCTTTCTTGGATTGACTGG GATATTTGGCAACCATCTTTTGTTTCTGATTGGCTTAAGCTATACTAATCCEST: gi|192323502|gb|FK016393.1|FK016393
genomic: CCCTTAACCAAACGCCTTCTGTTGTCATTCTTCTTTCTTGGATTGACTGGgtgaggttct ... tcatgctcagGATATTTGGCAACCATCTTTTGTTTCTGATTGGCTTAAGCTATACTAATCC
EST: TTAACCAAACGCCTTCTGTTTGTCATTCTTCTTTCTTGGGATTTGACTGG GATATTTGGCAACCATCTTTTGTTTTCTGATTGGCTTAAGCTATACTAAT
genomic: TTAACCAAACGCCTTCTGTT-GTCATTCTTCTTTCTTGG-ATT-GACTGGgtgaggttct ... tcatgctcagGATATTTGGCAACCATCTTTTGTTT-CTGATTGGCTTAAGCTATACTAAT
aatcatagtgtttcattgatgcattggtattttttgcttctttattcatgctcagGATATTTGGCAACCATCTTTTGTTTCTGATTGGCTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCAGCCACTCCAGTCTTTACTTTTCTG
cattgat putative branch site (score: 4)
ttttttgcttctttat putative PPT
tatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggttctggatatagtcacatatttcctatatttgttatgtttgaatcatagtgtttcattgatgcattggtattttttgcttctttattcatgctcagGATATTTGGCAACCATCTTTTGTTTCTGATTGGCTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCAGCCACTCCAGTCTTTACTTTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC