Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcatctctgtttaagtcttgttttatctgtcatatatatgcagtagtgatgccttactagaaatgcatatccagtattttgttgtttgaattttgaaacctaacttttagGTGCAATGGACACCAAATTATTGGAGGCACTGTATTGGAAAGGGATACCAGTTTTTGACATGGGCAGCCATATGAGCACAGTTGATGTTGGCTGGGGTTC

Basic information

species Glycine max
transcript GLYMA16G08350.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08350.2 (Glycine max), 3'ss of exon 2
lower sequence: AT2G35610.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagcatctctgtttaagtcttgttttatctgtcatatatatgcagtagtgatgccttactagaaatgcatatccagtattttgttgtttgaattttgaaacctaacttttagGTGCAATGGACACCAAATTATTGGAGGCACTGTATTGGAAAGGGATACCAGTTTTTGACATGGGCAGCCATATGAGCACAGTTGATGTTGGCTGGGGTTC
                      ||  || ||  |  || ||||  | |  ||||     | |  |   || | ||    | || ||   || |  ||      ||   || ||||||| ||||| || || ||||| |||||  |||| ||||||||  | ||||||||||||||||| ||||||||||||||||| ||||| || ||||||||
---------------------gtgagttgtcacttcta-atatctatttctgattgtccatttcactggctt-tctgtaagttagtaactttatgttatggggct---ttatagGTGCGATGGATACAAAGTTATTAGAGGCTTTGTACTGGAAAGGCGTTCCAGTTTTTGACATGGGAAGCCATATGAGCACAGTGGATGTCGGGTGGGGTTC

upper sequence: GLYMA16G08350.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv02s0087g00740.t01 (Vitis vinifera), 3'ss of exon 3
gtgagcatctctgtttaagtcttgttttatctgtcatatatatgcagtagtgatgccttactagaaatgcatatccagtattttgttgtttgaattttgaaacctaacttttagGTGCAATGGACACCAAATTATTGGAGGCACTGTATTGGAAAGGGATACCAGTTTTTGACATGGGCAGCCATATGAGCACAGTTGATGTTGGCTGGGGTTC
||  |  ||    ||     ||    |||  |     | |||| || |  |     | || |  |  |  || | ||  | | |   |   ||| |||||||      || ||||||||||||||||||| |||||||||||  ||||||||| |||  | ||||| ||||| ||||||||||| ||||||||| | |||||||| |||||  |
gtaggt-tcctcattcggacctgtaattacttccttgaaatat-cactttt--ccacatattctatgtcaattttcaagactgttaag---gaagtttgaaattgttgttatagGTGCAATGGACACCAAGTTATTGGAGGCGTTGTATTGGAGAGGTGTTCCAGTCTTTGATATGGGCAGCCACATGAGCACAATAGATGTTGGATGGGGAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213594699|gb|DB959810.1|DB959810
EST:     TACGTGGGTTAAACAATTGACAGATCTGGGGGTTTCTAATTTCCTTGTTG                         GTGCAATGGACA
genomic: TACGTGGGTTAAACAATTGACAGATCTGGGGGTTTCTAATTTCCTTGTTGgtgagcatct ... taacttttagGTGCAATGGACA
EST: gi|209727652|gb|BW652025.1|BW652025
EST:     TACGTGGGTTAAACAATTGACAGATCTGGGGGTTTCTAATTTCCTTGTTG                         GTGCAATGGACACCAAATTATTGGAGGCACTGTATTGGAAAGGGATACCAG
genomic: TACGTGGGTTAAACAATTGACAGATCTGGGGGTTTCTAATTTCCTTGTTGgtgagcatct ... taacttttagGTGCAATGGACACCAAATTATTGGAGGCACTGTATTGGAAAGGGATACCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actagaaatgcatatccagtattttgttgtttgaattttgaaacctaacttttagGTGCAATGGACACCAAATTATTGGAGGCACTGTATTGGAAAGGGATACCAGTTTTTGACATGGGCAGCCATATGAGCACAGTTGATGTTGGCTGGGGTTC
                                          acctaac  putative branch site (score: 2)
                                                ctttt  CT-rich tract
                             tttgaattttgaaa  TA-rich tract