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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttttggtgttggtggaagtgaattgtgtttgaagtttgtgcatactgtgcttgttaattgtgctgggctatgttgtgttacatgtgtgttgatgttatgtgggcagAGTGACAGCCATAATCTCAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAACTGGCTGTCATTG

Basic information

species Glycine max
transcript GLYMA16G08320.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08320.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g68750.1 (Oryza sativa), 3'ss of exon 3
gtttgttttttggtgttggtggaagtgaattgtgtttgaagtttgtgcatactgtgcttgttaattgtgctgggctatgttgtgttacatgtgtgttgatgttatgtgggcagAGTGACAGCCATAATCTCAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAACTGGCTGTCATTG
              ||      ||     || |||  ||  |  |||  |    || | |||   |     ||    |    || | |||   |     | ||||||  ||||||||| ||||||||||| |||||||||||||||||||| ||||| ||| | || || |||| |||| || | |||||| |||| || |||||||| ||||
--------------gtgcacacaaagttcttatgtgagacataagtgattttcatgat-gttgtgtccataggaaattaacctgcttcat---taactcttttatgtttgcagAGTGATAGCCATAATCTTAAGTACATGGGCATTGATGCTCTTGGCCGGTTAATTAAAATAAATCCAGATATCGCAGAAGAGCACCAGCTGGCTGTTATTG

upper sequence: GLYMA16G08320.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G031352_T01 (Zea mays), 3'ss of exon 2
gtttgttttttggtgttggtggaagtgaattgtgtttgaagtttgtg-catactgtgcttgttaattgtgctgggctatgttgtgttacatgtgtgttgatgttatgtgggcagAGTGACAGCCATAATCTCAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAACTGGCTGTCATTG-----------
           | |       ||  |  ||| ||    || |   || |||  |||| |  ||      |||   | |  |  |   |    ||  |||||         ||||||||| || |||||||| |||||||||||||||||||| |||||  || | ||||| |||| |||| || |||||||| |||| || |||||||||||||           
-----------gtttgcacatgatctttattatgggaaaaataaatggcatgttgtgttctttgg--aggctaaccaacttaat--catccttgcattgatt--------gcagagtgatagtcataatcttaagtacatgggcattgatgctcttggcagGTTAATAAAAATAAATCCAGATATTGCAGAAGAGCACCAGCTGGCTGTCATTGATTGCTTAGAG

upper sequence: GLYMA16G08320.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G031352_T02 (Zea mays), 3'ss of exon 3
gtttgttttttggtgttggtggaagtgaattgtgtttgaagtttgtg-catactgtgcttgttaattgtgctgggctatgttgtgttacatgtgtgttgatgttatgtgggcagAGTGACAGCCATAATCTCAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAACTGGCTGTCATTG
           | |       ||  |  ||| ||    || |   || |||  |||| |  ||      |||   | |  |  |   |    ||  |||||         ||||||||| || |||||||| |||||||||||||||||||| |||||  || | ||||| |||| |||| || |||||||| |||| || |||||||||||||
-----------gtttgcacatgatctttattatgggaaaaataaatggcatgttgtgttctttgg--aggctaaccaacttaat--catccttgcattgatt--------gcagAGTGATAGTCATAATCTTAAGTACATGGGCATTGATGCTCTTGGCAGGTTAATAAAAATAAATCCAGATATTGCAGAAGAGCACCAGCTGGCTGTCATTG

upper sequence: GLYMA16G08320.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G146697_T03 (Zea mays), 3'ss of exon 3
gtttgttttttggtgttggtggaagtgaattgtgtttgaagtttgtgcatactgtgcttgttaattgtgctgggctatgttgtgttacatgtgtgttgatgttatgtgggcagAGTGACAGCCATAATCTCAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAACTGGCTGTCATTG
              ||| | | | |    || |  | |||   || |||| ||||  || ||      |||   | |  |  |  | | | |  |||||| |        |||||||| || |||||||| ||||||||||| |||||||| ||||| ||||| ||||| ||||  ||| || |||||||| |||| || || ||||||||||
--------------gtttgcgcatgatctttattatggaaaaatg-gcatgctgtcttttttgg--aggctaaccaacttaatcatcccttt-cgttgattt--------cagAGTGATAGTCATAATCTTAAGTACATGGGTATTGATGCTCTTGGCCGGCTAATAAAAATAAACCCAGATATTGCAGAAGAGCACCAGCTAGCTGTCATTG

upper sequence: GLYMA16G08320.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G31730.1 (Arabidopsis thaliana), 3'ss of exon 2
gtttgttttttggtgttggtggaagtgaattgtgtttgaagtttgtgcatac-tgtgcttgttaattgtgctgggctatgttgtgttacatgtgtgttgatgttatgtgggcagAGTGACAGCCATAATCTCAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAACTGGCTGTCATTG
                        ||   |||| ||    || |||    |  |   ||||||||   | |       |||| | ||| ||    |   |   ||| |  ||||||||| || || ||||| ||||||||||| |||||||  ||||||||  ||||||| ||||| ||| |  |||| || ||||| ||||| ||||| || |
------------------------gtttgttgtcttcctggtatgtatgcatatactcttgttaaccttacgat----tgttat-ttaaatcccgggcaa-actattt--gcagAGTGATAGTCACAATCTGAAGTACATGGGTATTGATGGTCTTGGTCGATTGATAAAAATAAGCCCAGACATTGCTGAGCAGCACCAACTTGCTGTGATAG

upper sequence: GLYMA16G08320.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv02s0087g00690.t01 (Vitis vinifera), 3'ss of exon 3
gtttgttttttggtgttggtggaagtgaattgtgtttg--aagtttgtgcatactgtgcttgttaattgtgctgg--gctatgttgtgttacatgtgtgttgatgttatg------tgggcagAGTGACAGCCATAATCTCAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAACTGGCTGTCATTG
|||||| |       ||  | |  | |         |   || ||  ||  ||   | | | |||    |  |||  || || || ||| ||   ||| ||  ||||||       | |||||||||| || |||||||| ||||| |||||||||||||| ||| || | |||||||||||||||||| |  |||| ||||| || ||| ||||||||||||
gtttgtctccacacctttttagttgcgtcccacaactactaatttcctgattatcat-catcttagagcttttggttgccatattttgtaactcatgtttttctgttattatccttttggcagAGTGATAGTCATAATCTAAAGTATATGGGCATTGATGCCCTTAGTAGACTGATAAAGATAAGTCCAGAAATTGCTGAACAACACCAATTGGCTGTCATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttaattgtgctgggctatgttgtgttacatgtgtgttgatgttatgtgggcagAGTGACAGCCATAATCTCAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAACTGGCTGTCATTG
                                        atgttat  TA-rich tract