1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acatatgctgatggcaatggcacagactcggatgaggtgaaagcggagtcatttagaaaggttaaacctggggcaatgacttgtatgccttctaacatagGCCTTGATGGATGGGGAGAAACAAGCATCCCCAACACTTCATCCAGAACTGGAAGCAGCTCTATCCATACTTCTTCAACTCATTCCTTGAACCCTACAAG
species | Glycine max |
transcript | GLYMA16G08260.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
gagtcatttagaaaggttaaacctggggcaatgacttgtatgccttctaacatagGCCTTGATGGATGGGGAGAAACAAGCATCCCCAACACTTCATCCAGAACTGGAAGCAGCTCTATCCATACTTCTTCAACTCATTCCTTGAACCCTACAAG
ttctaac putative branch site (score: 1)
tgccttct CT-rich tract
atttagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatatgctgatggcaatggcacagactcggatgaggtgaaagcggagtcatttagaaaggttaaacctggggcaatgacttgtatgccttctaacatagGCCTTGATGGATGGGGAGAAACAAGCATCCCCAACACTTCATCCAGAACTGGAAGCAGCTCTATCCATACTTCTTCAACTCATTCCTTGAACCCTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - -tgctgat
- - - - - - ggcaatg
- - - - - - - - - - cacagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgcc