1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atactgtgaaaacttgtgttacgggcaatgtctttattgcattttagggttccatgaccttccatgtcttttgcctcaaaaacatttcttattattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGTTGAAAGAGTTTCAGAAGGCACAACGTCTTGCAGCTGAGAGGGAAACAG
species | Glycine max |
transcript | GLYMA16G08200.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|298189796|gb|HO038199.1|HO038199
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|298185952|gb|HO031113.1|HO031113
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|15662381|gb|BI699752.1|BI699752
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|193552638|gb|FK506161.1|FK506161
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|37994080|gb|CF805826.1|CF805826
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|7686453|gb|AW757101.1|AW757101
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|209725412|gb|BW651556.1|BW651556
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|298196583|gb|HO041326.1|HO041326
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|193483117|gb|FK448440.1|FK448440
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|208150896|gb|GD946013.1|GD946013
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCEST: gi|192299164|gb|FG992895.1|FG992895
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTC
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|207829398|gb|GD804016.1|GD804016
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: TTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATAGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|209702008|gb|BW683185.1|BW683185
genomic: TTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|192296912|gb|FG990258.1|FG990258
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|193488148|gb|FK453185.1|FK453185
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|192315290|gb|FK009610.1|FK009610
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGACTTTCAGGCAGTGEST: gi|19452417|gb|BM953827.1|BM953827
genomic: CAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|21255947|gb|BQ452835.1|BQ452835
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CATCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|9565390|gb|BE474899.1|BE474899
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... attattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
agggttccatgaccttccatgtcttttgcctcaaaaacatttcttattattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGTTGAAAGAGTTTCAGAAGGCACAACGTCTTGCAGCTGAGAGGGAAACAG
tttcttatt CT-rich tract
tcaaaaacatttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atactgtgaaaacttgtgttacgggcaatgtctttattgcattttagggttccatgaccttccatgtcttttgcctcaaaaacatttcttattattgcagGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGTTGAAAGAGTTTCAGAAGGCACAACGTCTTGCAGCTGAGAGGGAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
-tactgtg
- - - - - -acttgtg
- - - - - - - - - - - - -caatgtc
- - - - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - tccatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcaaa