Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttttaccaaaattattgctctttgttaacattgttgctataattaattaatcaatcagtttttaatacttgttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTCTCAGGCCAATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAG

Basic information

species Glycine max
transcript GLYMA16G08090.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 2
gtaatttttaccaaaattattgctctttgttaacattgttgctataattaattaatcaatcagtttttaatacttgttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTCTCAGGCCAATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAG
                             | ||||   ||||| | ||| ||| |    | | | | | ||        |     |   |   |  | | |   | ||||  || | |   ||     | | |||| || || ||||||||||| ||||| |||||| | || |||||||| |||||  | || ||||||||  |||||||||| || |||||||||||    ||
----------------------------ctcaaca--attgctttcattgatttacttgtta-tgtatgatttcccccctattgcacctgctgacaagcgta--taattt--accctgctatgttctctgtgcagCACGTCAAAAGAAGGCTGTGAAGATATTCCCACGACCAACTGCTGGCCCTCTTCGTCCCATTGTTCAATGCCAGACTCTCAAGTACAACATGAAGTCAAG

upper sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 2
gtaatttttaccaaaattattgct-ctttgttaacattgttgctataattaattaatcaatcagtttttaatacttgttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTCTCAGGCCAATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAG
                   ||||| |||||   ||    ||| |||   |||||  ||  | |  |||              || ||  | | |  || |||    || |||||| | |    |  |  | | ||||||| || ||||||||||| ||||| |||||| | || |||||||| |||||  | || ||||| ||  |||||||||| || |||||||||||    ||
------------------gttgcttctttgccgaccac-ttgttatgtgtaatttctcccttatctttct------------catgattactaa--cagcttt--ctactttgaccctgctacgttat-tatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTCTTCGCCCCATTGTGCAATGCCAGACTCTCAAGTACAACATGAAGTCGAG

upper sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 2
gtaatttttaccaaaattattgctctttgttaacattgttgctataattaattaatcaatcagtttttaatacttg-ttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTCTCAGGCCAATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAG
                                  | | |    ||| || || ||  || ||   |  |||  | | || | |   | || ||  || ||      || || ||| | |   ||     | | ||||||| || ||||||||||| ||||| |||||  | || |||||||| |||||  | || ||||||||  |||||||| | || |||||||||||    ||
---------------------------------tactataatgata-ttgatgaaggaaccaagatg-aatgttcgcttttactcaataattgcttctacactt-ctaattggaccctgtaatgttctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAG

upper sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G49010.5 (Arabidopsis thaliana), 3'ss of exon 2
gtaatttttaccaaaattattgctctttgttaacattgttgctataattaattaatcaatcagtttttaatacttgttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTCTCAGGCCAATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAG
                            ||||  | |  |  | | |  | ||     ||   || | |    | ||| |      | | |  |    |||  | | || | |      | ||  |||    ||||  |||| ||||||||||| ||||| |||||  | || ||| ||||||||||| | ||  |||| ||||| |||||||| || ||||||||||| |||||
----------------------------gttagtagtagtaatgtcaacactt--ctgat--attgtcatgtttcgttttaagtttacactacaatctctttgggtcttattatgttatgttg-taca----cagCGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCTCCGCCCTGTTGTGCATGGTCAGACTCTTAAGTACAACATGAAGGTCAG

upper sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G23900.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaatttttaccaaaattattgctctttgttaacattgttgctataattaattaatcaatcagtttttaatacttgttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTCTCAGGCCAATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAG
                                     |||  || | |   |  ||   ||   ||| |||     || |||    ||  | ||| |   |  |||  |||     |  |        || |||||| | |||||||||||||| ||||| |||||  | || ||  |||| |||||| | ||  |||||||||| ||||| || || |||||||||||||| ||
-------------------------------------gttagtaaagtctctacattt-tctactttaaatg---attttgctcttaattttaat-agtgtatgtttcttttgtgtgatg----tgttttctcagCTAGACAGAAGAAGGCTGTGAAGATCTTCCCTCGTCCCACCTCTGGTCCTCTCCGACCTGTTGTTCATGGTCAGACACTTAAGTACAACATGAAAGTTAG

upper sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0047g01160.t01 (Vitis vinifera), 3'ss of exon 1
gtaatttttaccaaaattattgctctttgttaacattgttgctataattaattaatcaatcagtttttaatacttgttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTCTCAGGCCAATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAG
                                 |||  ||| | |  |  | |  |  ||   |||| |||| ||||       ||    |   | ||||    |||  |||           |  ||| | ||||| | |||||||| ||||| |||||||||||  | || |||| |||||| ||  | ||| |||||||||| || ||| |||| |||||||||||||||||
--------------------------------tcatgtttgattttgtccagtcttttat--attttgaatatttgtaccatgtgatgc-tattttaactgagcttaaattggtttttcatgaaaccatctccagCTAGACAGAAGAAAGCTGTGAAGATTTTCCCTCGCCCCACTGTTGGACCACTTCGCCCACTTGTTCATGGACAAACTTTGAAGTACAACATGAAAGTCAG

upper sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0006g00820.t01 (Vitis vinifera), 3'ss of exon 2
--------gtaatttttaccaaaattattgctctttgttaacattgttgctataattaattaatcaatcagtttttaatac-ttgttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacac-attttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTCTCAGGCCAATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAG
         |||   ||   |||||        | | ||  |  | ||||||  |||| ||  |||    | || |  | | || | | ||  |   | |   |   || |  || | |||||| |   || | || || | ||||| |||| ||||||||||| ||||| |||||| |||| ||  ||||||| ||  | || ||||| ||||| || |||||||| ||||| |||||||| ||
gtagctacttaaccatt-ttaaaatggaaatggtgtttttcctgtcttgcta--attagttggtcataatgattctgtttcattatcaagcttgcttattctgt--gctcgcattttcttgacatgtctgttataccatctccagCTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCACTTCGACCTATTGTCCATGGGCAAACTCTGAAGTACAATATGAAAGTTAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209722147|gb|BW659338.1|BW659338
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|57575842|gb|CX548813.1|CX548813
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298197042|gb|HO041729.1|HO041729
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298188363|gb|HO035056.1|HO035056
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAATGCTGTCAAGATTTTCCCAATGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|58025292|gb|CX712033.1|CX712033
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298167525|gb|HO012788.1|HO012788
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298191600|gb|HO039079.1|HO039079
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGCCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|14011765|gb|BG726687.1|BG726687
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|4289624|gb|AI441502.1|AI441502
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|42722905|gb|CK768804.1|CK768804
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|11688003|gb|BF595679.1|BF595679
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|192333930|gb|FK024743.1|FK024743
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|19936920|gb|BQ081066.1|BQ081066
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298174143|gb|HO017479.1|HO017479
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|58018618|gb|CX705360.1|CX705360
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|192323376|gb|FK017077.1|FK017077
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298182976|gb|HO028239.1|HO028239
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTCCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|192332197|gb|FK023846.1|FK023846
EST:     TGTGAAGACTTGGTTTAACCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|11411696|gb|BF423766.1|BF423766
EST:     GGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: GGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|22931546|gb|BU548685.1|BU548685
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCNGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|192311408|gb|FK003501.1|FK003501
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298176355|gb|HO023056.1|HO023056
EST:     TGTGAAGACTTGGTTTAATCAACCAGTACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|7042773|gb|AW472667.1|AW472667
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAG-CGTTTAG                         CTCGGCAGAAGAAGGCTG-CAAGATTTTCCCAAGG
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGG
EST: gi|298180531|gb|HO025618.1|HO025618
EST:     TGTGAAGACTTGGTTTAACCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|209722700|gb|BW657954.1|BW657954
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298177413|gb|HO027194.1|HO027194
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|192311409|gb|FK003502.1|FK003502
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|19934368|gb|BQ079398.1|BQ079398
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298172584|gb|HO019624.1|HO019624
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGCCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|192297096|gb|FG988192.1|FG988192
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGACCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|192306965|gb|FK002659.1|FK002659
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|151409204|gb|EV279012.1|EV279012
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|33388395|gb|CA851602.1|CA851602
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCANGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298170959|gb|HO015935.1|HO015935
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|17153985|gb|BM143918.1|BM143918
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|192332787|gb|FK026788.1|FK026788
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|151397933|gb|EV267806.1|EV267806
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|7232255|gb|AW567612.1|AW567612
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298185148|gb|HO030361.1|HO030361
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGTGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCCC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|58018052|gb|CX704794.1|CX704794
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|16997107|gb|BM086479.1|BM086479
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGACCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|7924930|gb|AW830956.1|AW830956
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|192299168|gb|FG992899.1|FG992899
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTCTCAGGCCAATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAG
                           ttttgac  putative branch site (score: 3)
                                              cattttc  putative PPT
                      agttatttt  TA-rich tract