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gtaagtatgttttgggtcgaatgatacgtgaagttgcattttgtattttctctaatttgtcctaatattacagGTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAG
species | Glycine max |
transcript | GLYMA16G08080.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAACATTTGGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTT GTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTAEST: gi|10237923|gb|BE806811.1|BE806811
genomic: GAACATTTGGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTgtaagtatgt ... aatattacagGTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTA
EST: GGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTT GTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTAEST: gi|10237927|gb|BE806815.1|BE806815
genomic: GGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTgtaagtatgt ... aatattacagGTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTA
EST: GGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTT GTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTAEST: gi|105632161|gb|DW246338.1|DW246338
genomic: GGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTgtaagtatgt ... aatattacagGTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTA
EST: GAACATTTGGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTT GTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTAEST: gi|207698243|gb|GD679628.1|GD679628
genomic: GAACATTTGGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTgtaagtatgt ... aatattacagGTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTA
EST: GAACATTTGGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTT GTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTA
genomic: GAACATTTGGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTgtaagtatgt ... aatattacagGTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTA
gaatgatacgtgaagttgcattttgtattttctctaatttgtcctaatattacagGTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAG
tcctaat putative branch site (score: 2)
attttgtattttctct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatgttttgggtcgaatgatacgtgaagttgcattttgtattttctctaatttgtcctaatattacagGTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT