1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctacttatttttatgtttcctttcttccatattttagctttttccttgtttgcaaagtttatttaatgagttgttgctgaaacaaattttcaacatgcagCTGCTGCCCGGCTTCCATCCTTTCATACCTGTGTTGGTGCAAATGAGGAGAGGCTAACTCCAAAATGGTATAAAGAGCATG
species | Glycine max |
transcript | GLYMA16G07970.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCTCCTTATGAAAGGCCTGCATTGAGCAAAGGATTTTTGCTTCCAGAAG CTGCTGCCCGGCTTCCATCCTTTCATACCTGTGTTGGTGCAAATGAGGAGA
genomic: TGCTCCTTATGAAAGGCCTGCATTGAGCAAAGGATTTTTGCTTCCAGAAGgtatagactc ... caacatgcagCTGCTGCCCGGCTTCCATCCTTTCATACCTGTGTTGGTGCAAATGAGGAGA
ttgtttgcaaagtttatttaatgagttgttgctgaaacaaattttcaacatgcagCTGCTGCCCGGCTTCCATCCTTTCATACCTGTGTTGGTGCAAATGAGGAGAGGCTAACTCCAAAATGGTATAAAGAGCATG
atttaat putative branch site (score: 4)
ttttc putative PPT
aaagtttatttaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctacttatttttatgtttcctttcttccatattttagctttttccttgtttgcaaagtttatttaatgagttgttgctgaaacaaattttcaacatgcagCTGCTGCCCGGCTTCCATCCTTTCATACCTGTGTTGGTGCAAATGAGGAGAGGCTAACTCCAAAATGGTATAAAGAGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - -tgtttcc
- - - - - - - - - - -ttcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa