1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...attttacaaagctcatccaaacacacactaagtaatgtctgttcttatttatataaatatttggagttccctaatgtagttttagtttcatttgtttcagATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTACTGACAGCAATTACATTGTTCCAGATTGCAATCTATGAA
species | Glycine max |
transcript | GLYMA16G07110.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGCTATGGAGAG ATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTAEST: gi|192313595|gb|FK005591.1|FK005591
genomic: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAGgttccttctc ... tttgtttcagATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
EST: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAG ATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTAEST: gi|298197220|gb|HO041963.1|HO041963
genomic: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAGgttccttctc ... tttgtttcagATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
EST: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAG ATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTAEST: gi|151401800|gb|EV271613.1|EV271613
genomic: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAGgttccttctc ... tttgtttcagATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
EST: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAG ATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTAEST: gi|192306919|gb|FG999952.1|FG999952
genomic: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAGgttccttctc ... tttgtttcagATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
EST: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAG ATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTAEST: gi|7327013|gb|AW620811.1|AW620811
genomic: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAGgttccttctc ... tttgtttcagATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
EST: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAG ATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTAEST: gi|192313596|gb|FK005592.1|FK005592
genomic: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAGgttccttctc ... tttgtttcagATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
EST: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAG ATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
genomic: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAGgttccttctc ... tttgtttcagATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
tatttatataaatatttggagttccctaatgtagttttagtttcatttgtttcagATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTACTGACAGCAATTACATTGTTCCAGATTGCAATCTATGAA
ccctaat putative branch site (score: 3)
tttcattt putative PPT
atataaatatttgga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttacaaagctcatccaaacacacactaagtaatgtctgttcttatttatataaatatttggagttccctaatgtagttttagtttcatttgtttcagATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTACTGACAGCAATTACATTGTTCCAGATTGCAATCTATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - ccaaaca
- - - - - - - - - - - -cacacta
- - - - - - - - - - - - - - - - - atgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgtag