1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atattgtttacatttttaatttgagtttctgctctcaagatatttgtgcagattagcatgttttgtgtccaaactccttacatttgatttcactctgcagGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAA
species | Glycine max |
transcript | GLYMA16G05600.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAATTGTAAAAAGCCGTCTGCGTATACCAATGAAGGGACGGATTCAACTG GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATEST: gi|207779438|gb|GD754580.1|GD754580
genomic: AAATTGTAAAAAGCCGTCTGCGTATACCAATGAAGGGACGGATTCAACTGgtattgatat ... cactctgcagGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTAT
EST: AAATTGTAAAAAGCCGTCTGCGTATACCAATGAAGGGACGGATTCAACTG GTGCTAAGCAATCCAGAAAAGACTCEST: gi|10236779|gb|BE805667.1|BE805667
genomic: AAATTGTAAAAAGCCGTCTGCGTATACCAATGAAGGGACGGATTCAACTGgtattgatat ... cactctgcagGTGCTAAGCAATCCAGAAAAGACTC
EST: AAATTGTAAAAAGCCGTCTGCGTATACCAATGAAGGGACGGATTCAACTG GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATEST: gi|207709012|gb|GD690512.1|GD690512
genomic: AAATTGTAAAAAGCCGTCTGCGTATACCAATGAAGGGACGGATTCAACTGgtattgatat ... cactctgcagGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTAT
EST: AAATTGTAAAAAGCCGTCTGCGTATACCAATGAAGGGACGGATTCAACTG GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATEST: gi|208095431|gb|GD896627.1|GD896627
genomic: AAATTGTAAAAAGCCGTCTGCGTATACCAATGAAGGGACGGATTCAACTGgtattgatat ... cactctgcagGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTAT
EST: AAATTGTAAAAAGCCGTCTGCGTATACCAATGAAGGGACGGATTCAACTG GTGCTAAGCAATCCAGAAAAG-CTCCTCTTCACACTTTTCTTTTGCAACTAEST: gi|192312930|gb|FK005486.1|FK005486
genomic: AAATTGTAAAAAGCCGTCTGCGTATACCAATGAAGGGACGGATTCAACTGgtattgatat ... cactctgcagGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTT-CTTTTGCAACTA
EST: AAATTGTAAAAAGCCGTCTGCGTATACCAATGAAGGGACGGATTCAACTG GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATEST: gi|10236805|gb|BE805693.1|BE805693
genomic: AAATTGTAAAAAGCCGTCTGCGTATACCAATGAAGGGACGGATTCAACTGgtattgatat ... cactctgcagGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTAT
EST: AAATTGTAAAAAGCCGTCTGCGTATACCAATGAAGGGACGGATTCAACTG GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATEST: gi|208117929|gb|GD915077.1|GD915077
genomic: AAATTGTAAAAAGCCGTCTGCGTATACCAATGAAGGGACGGATTCAACTGgtattgatat ... cactctgcagGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTAT
EST: AAATTGTAAAAAGCCGTCTGCGTATACCAATGAAGGGACGGATTCAACTG GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTAT
genomic: AAATTGTAAAAAGCCGTCTGCGTATACCAATGAAGGGACGGATTCAACTGgtattgatat ... cactctgcagGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTAT
gtgcagattagcatgttttgtgtccaaactccttacatttgatttcactctgcagGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAA
tttcactct CT-rich tract
atttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattgtttacatttttaatttgagtttctgctctcaagatatttgtgcagattagcatgttttgtgtccaaactccttacatttgatttcactctgcagGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAA
- - - - - - - - - - - - - - ctgctct
- - - - - - - - - - - - - - - - - - - - - tttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtcc