Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttcctataacttttttgctacttgaggttacctccttctgtttctgctctgctgcattttagttcatccctttttacaaacaagtgctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGTATTTGCCGGTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCT

Basic information

species Glycine max
transcript GLYMA16G05530.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37995718|gb|CF807307.1|CF807307
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|192309917|gb|FK001461.1|FK001461
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|58019764|gb|CX706506.1|CX706506
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|207774423|gb|GD746289.1|GD746289
EST:     TTTGATGTAATCAGCGGTAGCACTTCCAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACA
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACA
EST: gi|13791399|gb|BG653990.1|BG653990
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|31465373|gb|CD407401.1|CD407401
EST:     TTGATGTAATCAGCGGTCAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGCCATCCTTTCTCACACATTTGAGCTGGAGCCNAAATCAAAGGGAGT
genomic: TTGATGTAATCAGCGGT-AGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|213617119|gb|DB963592.1|DB963592
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|17401673|gb|BM178455.1|BM178455
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|192328456|gb|FK020730.1|FK020730
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|4299243|gb|AI442876.1|AI442876
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|6914631|gb|AW396153.1|AW396153
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|26056181|gb|CA799095.1|CA799095
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|14991791|gb|BI317464.1|BI317464
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|192310732|gb|FK001156.1|FK001156
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|7589987|gb|AW705750.1|AW705750
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|254347231|gb|GR853480.1|GR853480
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|254347232|gb|GR853481.1|GR853481
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|254344547|gb|GR855418.1|GR855418
EST:     GCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: GCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|7588956|gb|AW704740.1|AW704740
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|19269510|gb|BM885766.1|BM885766
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|19269735|gb|BM885991.1|BM885991
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|192326907|gb|FK019199.1|FK019199
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGAAAGGAGGCAAAATCAAAGGGAG
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCT-GGAGGCAAAATCAAAGGGAG
EST: gi|16346823|gb|BI972418.1|BI972418
EST:     TTGATGTAATCAGCGGTAGCACTTTCAA-GTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTGATGTAATCAGCGGTAGCACTT-CAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|7925531|gb|AW831557.1|AW831557
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|19268686|gb|BM884942.1|BM884942
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|151410082|gb|EV279890.1|EV279890
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|208317318|gb|GE117499.1|GE117499
EST:     CTTCAAAGTCATTGGGTAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: CTTCAAAGTCA-TGGG-AAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|192296517|gb|FG989838.1|FG989838
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACGTTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|7041985|gb|AW471879.1|AW471879
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|192294092|gb|FG986181.1|FG986181
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|21285290|gb|BQ473161.1|BQ473161
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|58019284|gb|CX706026.1|CX706026
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|16997127|gb|BM086499.1|BM086499
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|23064011|gb|BU578784.1|BU578784
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|21994234|gb|BQ785762.1|BQ785762
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|57574562|gb|CX547537.1|CX547537
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|7286236|gb|AW598723.1|AW598723
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|31561271|gb|CD487109.1|CD487109
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|254345416|gb|GR855859.1|GR855859
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|31460384|gb|CD402352.1|CD402352
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|9439886|gb|BE440398.1|BE440398
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|11688866|gb|BF596542.1|BF596542
EST:     AGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: AGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|10710516|gb|BF010234.1|BF010234
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|193616477|gb|FK566989.1|FK566989
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|151403836|gb|EV273646.1|EV273646
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|20814723|gb|BQ299201.1|BQ299201
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|9203581|gb|BE329805.1|BE329805
EST:     TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGCGGTAGCACTTCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgctctgctgcattttagttcatccctttttacaaacaagtgctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGTATTTGCCGGTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCT
                                             ctattttc  CT-rich tract
                             tttttacaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtttcctataacttttttgctacttgaggttacctccttctgtttctgctctgctgcattttagttcatccctttttacaaacaagtgctattttcagTGGTGGCATCCTTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGTATTTGCCGGTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG