1 5' 3' | 2 5' 3' | 3 5' 3' |
...ccaactagattgatttatatttttatgttgacagaatttaattgcattggtgatttgctaaattgttttaaattgactttagtgtttctgatatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAGGGCTTTGGATAACC
species | Glycine max |
transcript | GLYMA16G05390.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGAACTGTATCNTGGCANCTTGCCAAGNNNNAAAAACCAAGCTGCAAAG GTTGAGGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGCEST: gi|24206318|gb|BU965571.1|BU965571
genomic: AGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGgtgatttttg ... atatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGC
EST: AGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAG GTTGAGGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGC
genomic: AGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGgtgatttttg ... atatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGC
attggtgatttgctaaattgttttaaattgactttagtgtttctgatatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAGGGCTTTGGATAACC
taaattgttttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaactagattgatttatatttttatgttgacagaatttaattgcattggtgatttgctaaattgttttaaattgactttagtgtttctgatatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAGGGCTTTGGATAACC
ccaacta
- - - - - - - - - - - - -tgttgac
- - - - - - - - - - - - - - - - - - - - - tgcattg
- - - - - - - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttctg