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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcacattgctataatcattactttcattcaccccaatatgacaaaaaaatgcactttgtcttgctttgaaaccatgaattagggtttgtatatgcatgaattgtagacttgaatatattttgaattaccaatattttggatcagtgagtcactgagaaattggttgttgttgttgcagGTTCAGGTTTACTTCAAATCAATGGCTGTTTCATATGTTCACATGCTTCAATGCAACAGGGGTTTCCACAAGGGTAACCTCTCCTATCCTAATTGCAGTT

Basic information

species Glycine max
transcript GLYMA16G05140.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409476|gb|EV279284.1|EV279284
EST:     GTTCAATCTCTCCTTGCTCAGTATAAAAGTTCCTCATTTTGTTGCAAAAG                         GTTCAGGTTTACTTCAAATCAATGGCTGTTTCATATGTTCACATGCTTCAA
genomic: GTTCAATCTCTCCTTGCTCAGTATAAAAGTTCCTCATTTTGTTGCAAAAGgtgcacattg ... gttgttgcagGTTCAGGTTTACTTCAAATCAATGGCTGTTTCATATGTTCACATGCTTCAA
EST: gi|17400397|gb|BM177179.1|BM177179
EST:     GTTCAATCTCTCCTTGCTCAGTATAAAAGTTCCTCATTTTGTTGCAAAAG                         GTTCAGGTTTACTTCAAATCAATGGCTGTTTCATATGTTCACATGCTTCAA
genomic: GTTCAATCTCTCCTTGCTCAGTATAAAAGTTCCTCATTTTGTTGCAAAAGgtgcacattg ... gttgttgcagGTTCAGGTTTACTTCAAATCAATGGCTGTTTCATATGTTCACATGCTTCAA
EST: gi|209715003|gb|BW650854.1|BW650854
EST:     GTTCAATCTCTCCTTGCTCAGTATAAAAGTTCCTCATTTTGTTGCAAAAG                         GTTCAGGTTTACTTCAAATCAATGGCTGTTTCATATGTTCACATGCTTCAA
genomic: GTTCAATCTCTCCTTGCTCAGTATAAAAGTTCCTCATTTTGTTGCAAAAGgtgcacattg ... gttgttgcagGTTCAGGTTTACTTCAAATCAATGGCTGTTTCATATGTTCACATGCTTCAA
EST: gi|6747878|gb|AW318334.1|AW318334
EST:     GTTCAATCTCTCCTTGCTCAGTATAAAAGTTCCTCATTTTGTTGCAAAAG                         GTTCAGGTTTACTTCAAATCAATGGCTGTTTCATATGTTCACATGCTTCAA
genomic: GTTCAATCTCTCCTTGCTCAGTATAAAAGTTCCTCATTTTGTTGCAAAAGgtgcacattg ... gttgttgcagGTTCAGGTTTACTTCAAATCAATGGCTGTTTCATATGTTCACATGCTTCAA
EST: gi|19453447|gb|BM954857.1|BM954857
EST:     GTTCAATCTCTCCTTGCTCAGTATAAAAGTTCCTCATTTTGTTGCAAAAG                         GTTCAGGTTTACTTCAAATCAATGGCTGTTTCATATGTTCACATGCTTCAA
genomic: GTTCAATCTCTCCTTGCTCAGTATAAAAGTTCCTCATTTTGTTGCAAAAGgtgcacattg ... gttgttgcagGTTCAGGTTTACTTCAAATCAATGGCTGTTTCATATGTTCACATGCTTCAA
EST: gi|8283380|gb|BE020941.1|BE020941
EST:     GTTCAATCTCTCCTTGCTCAGTATAAAAGTTCCTCATTTTGTTGCAAAAG                         GTTCAGGTTTACTTCAAATCAATGGCTGTTTCATATGTTCACATGCTTCAA
genomic: GTTCAATCTCTCCTTGCTCAGTATAAAAGTTCCTCATTTTGTTGCAAAAGgtgcacattg ... gttgttgcagGTTCAGGTTTACTTCAAATCAATGGCTGTTTCATATGTTCACATGCTTCAA
EST: gi|209701860|gb|BW664565.1|BW664565
EST:     GTTCAATCTCTCCTTGCTCAGTATAAAAGTTCCTCATTTTGTTGCAAAAG                         GTTCAGGTTTACTTCAAATCAATGGCTGTTTCATATGTTCACATGCTTCAA
genomic: GTTCAATCTCTCCTTGCTCAGTATAAAAGTTCCTCATTTTGTTGCAAAAGgtgcacattg ... gttgttgcagGTTCAGGTTTACTTCAAATCAATGGCTGTTTCATATGTTCACATGCTTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaccaatattttggatcagtgagtcactgagaaattggttgttgttgttgcagGTTCAGGTTTACTTCAAATCAATGGCTGTTTCATATGTTCACATGCTTCAATGCAACAGGGGTTTCCACAAGGGTAACCTCTCCTATCCTAATTGCAGTT
      aatatttt  TA-rich tract